Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.1e-236 823.2 508 100.0
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 7.7e-76 288.9 518 45.6
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 2.2e-75 287.3 518 45.6
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 1.5e-68 264.6 525 48.0
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 6.5e-67 259.2 605 38.3
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 3.9e-64 250.0 597 40.7
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 2.0e-63 247.7 678 36.4
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 5.7e-63 246.1 580 42.1
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.4e-61 241.5 627 40.5
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 4.5e-60 236.5 624 39.9
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 4.5e-60 236.5 568 38.4
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 5.9e-60 236.1 608 37.5
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 3.8e-59 233.4 739 31.1
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 6.5e-59 232.6 592 40.9
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 1.2e-57 228.4 629 40.4
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 2.1e-57 227.6 673 38.3
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 3.6e-57 226.9 691 35.2
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 4.7e-57 226.5 574 38.7
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 6.1e-57 226.1 615 40.8
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.0e-56 225.3 579 41.1
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.4e-56 224.9 645 36.6
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 1.8e-56 224.6 642 37.7
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.3e-56 224.2 554 38.4
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 5.2e-56 223.0 581 38.0
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.5e-55 221.5 578 42.0
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.5e-55 221.5 556 45.9
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 1.5e-55 221.5 552 45.3
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.0e-55 221.1 560 40.0
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 4.4e-55 219.9 706 38.1
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 4.4e-55 219.9 590 45.4
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 7.4e-55 219.2 688 32.8
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 6.3e-54 216.1 627 36.2
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 8.2e-54 215.7 544 42.3
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 1.1e-53 215.3 505 36.2
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 2.4e-53 214.2 718 31.9
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.2e-52 211.8 671 36.8
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 2.6e-52 210.7 612 37.3
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 4.5e-52 209.9 578 40.5
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 7.7e-52 209.1 658 39.5
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 6.5e-51 206.1 532 36.3
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 1.5e-50 204.9 561 40.6
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 1.9e-50 204.5 250 51.6
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 1.9e-50 204.5 523 35.2
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 5.5e-50 203.0 636 40.6
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 9.4e-50 202.2 619 36.5
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 5.2e-48 196.4 650 36.9
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 5.2e-48 196.4 554 45.1
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.6e-47 194.1 625 37.4
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 9.8e-47 192.2 641 39.9
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 9.8e-47 192.2 683 37.6
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 1.7e-46 191.4 652 36.7
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 3.7e-46 190.3 581 35.6
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 6.3e-46 189.5 576 35.1
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 6.3e-46 189.5 658 36.6
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 1.4e-45 188.3 673 36.0
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 2.4e-45 187.6 269 47.2
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 3.1e-45 187.2 673 36.0
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 4.1e-45 186.8 658 36.3
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 4.1e-45 186.8 631 35.7
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.2e-44 185.3 638 35.4
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 3.5e-44 183.7 259 48.3
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 5.9e-44 183.0 650 39.8
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 3.8e-43 180.3 681 31.9
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 3.8e-43 180.3 507 39.4
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.5e-42 178.3 613 35.7
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 2.5e-42 177.6 668 34.0
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 4.7e-41 173.3 756 30.7
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 4.7e-41 173.3 533 44.1
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 6.1e-41 172.9 252 48.0
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 1.4e-40 171.8 520 44.0
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 1.8e-40 171.4 707 30.4
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 1.5e-39 168.3 409 36.2
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 1.5e-39 168.3 710 29.7
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 2.6e-39 167.5 240 47.5
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 7.5e-39 166.0 260 43.8
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.3e-38 165.2 231 47.6
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 2.8e-38 164.1 526 37.6
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 3.7e-38 163.7 593 31.2
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 1.1e-37 162.2 581 38.9
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 1.8e-37 161.4 637 30.0
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 3.1e-37 160.6 500 38.6
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 2.0e-36 157.9 563 40.1
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 2.7e-36 157.5 526 39.7
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 1.3e-35 155.2 764 27.6
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 1.7e-35 154.8 574 39.5
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 9.5e-34 149.1 557 39.1
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 9.5e-34 149.1 540 39.6
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 1.2e-33 148.7 586 37.0
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 5.2e-32 143.3 567 32.1
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 6.8e-32 142.9 544 39.0
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 2.0e-31 141.4 614 31.1
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 9.8e-31 139.0 239 44.4
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 2.9e-30 137.5 192 47.4
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 4.9e-30 136.7 236 41.1
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 2.0e-28 131.3 243 42.4
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 8.9e-24 115.9 559 34.2
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 4.4e-23 113.6 531 33.7
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 5.8e-23 113.2 680 25.7
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.9e-21 108.2 190 40.5
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 4.7e-17 93.6 323 46.1
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 8.1e-17 92.8 118 64.4
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 1.1e-16 92.4 128 49.2
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 3.1e-16 90.9 126 43.7
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 4.4e-15 87.0 104 51.0
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.3e-14 85.5 320 33.8
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 4.9e-14 83.6 125 42.4
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.6e-09 67.4 330 28.5
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 4.7e-09 67.0 120 38.3
Glyma.10G258901 Glycine max HOM05D006481 ORTHO05D008160 6.2e-09 66.6 117 42.7
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.4e-08 65.5 45 64.4
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 4.0e-08 63.9 243 28.4
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 4.0e-08 63.9 243 28.4
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.7e-06 58.5 124 38.7
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 3.7e-06 57.4 55 54.5


User provided reference genes

Program Settings