Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 1.4e-95 352.8 164 100.0
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 1.2e-67 260.0 152 77.6
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 6.1e-67 257.7 160 75.0
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.5e-65 253.1 160 75.0
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.0e-65 252.7 160 72.5
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.0e-61 240.4 156 73.1
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 2.7e-59 232.3 160 66.9
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 1.8e-58 229.6 157 66.2
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.3e-58 229.2 145 73.1
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 3.0e-58 228.8 152 72.4
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.5e-57 226.5 146 73.3
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 5.7e-57 224.6 139 72.7
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 5.7e-57 224.6 149 70.5
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 5.7e-57 224.6 158 68.4
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 7.5e-57 224.2 145 73.8
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 7.5e-57 224.2 139 74.1
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 2.2e-56 222.6 133 73.7
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 2.2e-56 222.6 123 82.1
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 6.3e-56 221.1 145 73.1
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 6.3e-56 221.1 121 81.8
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 6.3e-56 221.1 158 65.8
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 6.3e-56 221.1 148 66.9
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.1e-55 220.3 158 63.3
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 1.8e-55 219.5 146 72.6
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 2.4e-55 219.2 142 69.0
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 4.1e-55 218.4 141 70.2
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 5.4e-55 218.0 147 68.0
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 5.4e-55 218.0 145 71.0
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 9.1e-55 217.2 153 65.4
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 9.1e-55 217.2 147 67.3
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 9.1e-55 217.2 139 71.9
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 9.1e-55 217.2 164 64.6
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 1.6e-54 216.5 150 68.7
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 1.6e-54 216.5 155 64.5
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.6e-54 216.5 155 65.8
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 2.0e-54 216.1 151 66.2
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 2.0e-54 216.1 132 75.0
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.7e-54 215.7 155 63.9
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 3.5e-54 215.3 152 64.5
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.0e-53 213.8 139 70.5
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.0e-53 213.8 161 62.7
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.0e-53 213.8 151 70.9
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 1.0e-53 213.8 138 73.2
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 1.0e-53 213.8 162 64.2
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.0e-53 213.8 155 68.4
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.3e-53 213.4 139 70.5
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.3e-53 213.4 134 70.1
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 1.1e-52 210.3 167 63.5
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.1e-52 210.3 136 70.6
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 1.1e-52 210.3 154 63.0
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 4.2e-52 208.4 141 70.2
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 4.2e-52 208.4 148 66.2
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 4.2e-52 208.4 148 67.6
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.2e-52 208.4 139 69.1
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 9.5e-52 207.2 128 71.9
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 2.1e-51 206.1 118 77.1
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 6.1e-51 204.5 164 61.6
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 8.0e-51 204.1 160 59.4
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.4e-50 203.4 164 61.6
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.4e-50 203.4 139 69.1
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.8e-50 203.0 149 62.4
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 1.8e-50 203.0 140 69.3
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.8e-50 203.0 161 61.5
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.3e-50 202.6 146 65.1
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 4.0e-50 201.8 142 64.1
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 5.2e-50 201.4 137 66.4
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 5.2e-50 201.4 163 58.9
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 8.9e-50 200.7 149 60.4
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 8.9e-50 200.7 144 67.4
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 1.2e-49 200.3 137 65.0
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 2.6e-49 199.1 137 64.2
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.6e-49 199.1 130 70.0
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 2.6e-49 199.1 135 65.2
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 3.4e-49 198.7 146 64.4
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 4.4e-49 198.4 142 65.5
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 9.8e-49 197.2 139 66.2
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 1.3e-48 196.8 136 66.9
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.7e-48 196.4 136 66.9
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 2.8e-48 195.7 135 64.4
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 2.8e-48 195.7 136 64.7
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 6.3e-48 194.5 135 65.9
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 6.3e-48 194.5 142 64.1
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 6.3e-48 194.5 135 65.9
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.8e-47 193.0 148 66.2
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.8e-47 193.0 119 73.9
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 2.4e-47 192.6 136 66.2
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 4.1e-47 191.8 147 61.2
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 4.1e-47 191.8 147 61.2
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 5.9e-46 188.0 136 62.5
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 2.3e-45 186.0 122 69.7
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 2.9e-45 185.7 135 63.0
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 6.6e-45 184.5 155 60.6
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 6.6e-45 184.5 143 58.0
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.6e-43 179.9 169 50.9
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.1e-43 179.5 117 65.0
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 2.8e-43 179.1 126 61.1
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 3.6e-43 178.7 107 72.0
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 8.0e-43 177.6 135 60.7
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.4e-42 176.8 134 59.0
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 6.8e-42 174.5 131 62.6
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 7.0e-39 164.5 89 80.9
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 2.6e-33 146.0 125 50.4
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 3.7e-32 142.1 82 75.6
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.9e-31 139.8 75 81.3
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 1.6e-30 136.7 122 57.4
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 2.1e-30 136.3 117 53.8
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 3.9e-29 132.1 158 48.1
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 4.7e-27 125.2 96 52.1
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.8e-26 123.2 117 45.3
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 4.4e-25 118.6 134 45.5
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.1e-23 114.0 78 65.4
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 1.4e-23 113.6 73 72.6
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 3.5e-22 109.0 89 49.4
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 2.3e-21 106.3 87 50.6
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 3.9e-21 105.5 87 49.4
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 5.1e-21 105.1 144 43.8
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.6e-19 100.1 93 44.1
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 2.6e-17 92.8 99 45.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 4.2e-15 85.5 92 42.4
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 9.2e-15 84.3 99 38.4
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 6.6e-13 78.2 56 60.7
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.6e-11 72.4 60 60.0
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.8e-10 70.1 65 50.8
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 4.4e-09 65.5 96 36.5
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 8.4e-08 61.2 39 69.2
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.4e-07 60.5 59 52.5
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 1.9e-07 60.1 59 54.2
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 4.2e-07 58.9 40 60.0


User provided reference genes

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