Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 7.7e-233 811.2 877 100.0
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 3.2e-98 364.0 881 71.6
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 3.6e-97 360.5 869 73.4
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 8.0e-97 359.4 875 71.7
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 4.8e-94 350.1 874 69.7
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 1.8e-93 348.2 874 73.5
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.6e-92 345.1 857 70.4
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 1.6e-92 345.1 881 70.5
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 6.5e-91 339.7 878 72.1
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.1e-90 339.0 868 70.0
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 1.9e-90 338.2 874 71.7
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 3.7e-86 323.9 876 72.4
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 4.8e-86 323.6 879 69.1
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 6.3e-86 323.2 876 68.7
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 1.8e-85 321.6 875 72.1
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 3.8e-83 313.9 802 78.6
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 5.0e-83 313.5 878 71.0
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 1.5e-82 312.0 878 59.9
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 1.5e-82 312.0 873 71.4
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 2.5e-82 311.2 870 64.7
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 5.5e-82 310.1 871 71.3
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 2.1e-81 308.1 877 64.5
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 4.7e-81 307.0 881 65.4
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 4.7e-81 307.0 817 75.4
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 1.5e-79 302.0 878 71.3
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 5.7e-79 300.1 865 70.3
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 3.7e-78 297.4 880 71.1
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 4.9e-78 297.0 868 68.2
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 8.3e-78 296.2 873 69.2
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 1.1e-77 295.8 874 70.8
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 1.6e-76 292.0 874 70.5
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 2.0e-76 291.6 877 69.3
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 1.7e-75 288.5 867 70.0
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 2.3e-75 288.1 858 68.2
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 7.3e-74 283.1 868 70.6
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 1.2e-73 282.3 869 70.4
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 1.2e-73 282.3 878 69.9
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 4.4e-71 273.9 383 72.3
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.9e-70 271.2 871 69.9
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.4e-69 268.9 868 69.9
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 3.2e-69 267.7 893 66.3
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.7e-68 264.6 868 69.7
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.3e-67 262.3 877 67.5
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 3.0e-67 261.2 874 67.3
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 3.0e-67 261.2 877 67.0
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 3.0e-67 261.2 883 66.0
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 3.9e-67 260.8 874 68.8
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 6.6e-67 260.0 873 68.2
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 8.0e-65 253.1 875 66.4
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 8.0e-65 253.1 884 68.6
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 2.3e-64 251.5 868 69.2
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 1.2e-63 249.2 881 67.1
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 1.2e-63 249.2 869 60.8
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 3.4e-63 247.7 877 66.1
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 2.2e-62 245.0 874 62.0
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 6.4e-62 243.4 866 65.8
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 2.0e-60 238.4 875 66.2
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.7e-60 238.0 839 70.4
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 3.5e-60 237.7 874 66.7
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 3.5e-60 237.7 869 65.1
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 3.5e-60 237.7 881 55.8
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 6.0e-60 236.9 875 65.8
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 2.3e-59 235.0 875 65.8
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 6.6e-59 233.4 838 70.3
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 2.3e-56 224.9 878 58.9
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 6.8e-56 223.4 884 63.2
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 8.9e-56 223.0 874 68.0
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 2.0e-55 221.9 878 62.6
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 1.3e-54 219.2 865 66.0
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 3.7e-54 217.6 854 68.4
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 3.7e-54 217.6 879 57.1
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 8.3e-54 216.5 867 65.4
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 5.4e-53 213.8 873 59.8
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 5.4e-53 213.8 873 59.8
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 7.1e-53 213.4 198 55.6
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 1.7e-51 208.8 891 55.9
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 5.1e-51 207.2 445 53.7
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.9e-50 205.3 365 67.4
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 7.3e-50 203.4 365 67.9
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 1.2e-49 202.6 365 67.7
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 2.6e-47 194.9 877 64.3
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 2.6e-47 194.9 382 64.4
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 5.4e-45 187.2 872 58.5
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 7.1e-45 186.8 784 70.7
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.6e-44 185.7 865 65.4
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 2.7e-44 184.9 810 65.3
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 4.6e-44 184.1 847 57.5
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 8.6e-43 179.9 854 57.3
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 7.3e-42 176.8 872 62.2
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 5.2e-40 170.6 174 51.1
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 2.6e-39 168.3 179 46.9
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 9.3e-37 159.8 891 48.8
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 6.2e-33 147.1 180 48.9
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 8.1e-33 146.7 369 59.1
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 5.4e-29 134.0 857 56.9
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 3.5e-28 131.3 881 62.3
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 9.6e-26 123.2 170 37.6
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 1.4e-24 119.4 150 42.7
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 1.4e-21 109.4 69 71.0
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 2.1e-20 105.5 194 35.6
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 2.7e-20 105.1 108 50.9
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 7.9e-20 103.6 382 50.0
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 6.2e-17 94.0 397 51.6
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 1.6e-12 79.3 102 41.2
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 3.9e-11 74.7 131 34.4
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 2.5e-10 72.0 124 38.7
Lj3g0013909 Lotus japonicus HOM05D006819 ORTHO05D008763 3.7e-09 68.2 167 25.7
Glyma.07G160400 Glycine max HOM05D007409 ORTHO05D009264 4.1e-08 64.7 139 30.2
Eucgr.F03279 Eucalyptus grandis HOM05D002453 ORTHO05D008746 6.9e-08 63.9 172 29.7
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 1.5e-07 62.8 97 33.0
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 2.0e-07 62.4 97 33.0
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 2.6e-07 62.0 97 34.0
SMO361G0319 Selaginella moellendorffii HOM05D005362 ORTHO05D010796 2.6e-07 62.0 94 35.1
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 3.4e-07 61.6 64 46.9
Medtr2g103520 Medicago truncatula HOM05D006819 ORTHO05D008763 3.4e-07 61.6 170 23.5
BcaB05g25205 Brassica carinata HOM05D006503 ORTHO05D008116 4.5e-07 61.2 97 33.0
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 5.9e-07 60.8 97 33.0
arahy.Tifrunner.gnm1.ann1.6R2JPG Arachis hypogaea HOM05D006819 ORTHO05D008763 5.9e-07 60.8 98 31.6
arahy.Tifrunner.gnm1.ann1.GQ0MHW Arachis hypogaea HOM05D006819 ORTHO05D008763 5.9e-07 60.8 98 31.6
Medtr7g451470 Medicago truncatula HOM05D002737 ORTHO05D009499 5.9e-07 60.8 122 31.1
PGR031G2661 Punica granatum HOM05D002453 ORTHO05D008746 7.6e-07 60.5 177 33.3
VMungo1215G2624 Vigna mungo HOM05D007409 ORTHO05D009264 1.0e-06 60.1 173 26.0
CDE09G1117 Ceratophyllum demersum HOM05D007173 ORTHO05D009151 1.7e-06 59.3 86 33.7
FAN08G2833 Fragaria x ananassa HOM05D001182 ORTHO05D008051 1.7e-06 59.3 131 28.2
Gohir.A05G005000 Gossypium hirsutum HOM05D002737 ORTHO05D009499 1.7e-06 59.3 112 27.7
Gorai.009G005800 Gossypium raimondii HOM05D002737 ORTHO05D009499 1.7e-06 59.3 112 27.7
BcaB06g27361 Brassica carinata HOM05D006858 ORTHO05D008767 2.2e-06 58.9 98 33.7
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 2.2e-06 58.9 102 32.4
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 2.2e-06 58.9 116 31.9
Aqoxy6G01000 Aquilegia oxysepala HOM05D006999 ORTHO05D008936 2.9e-06 58.5 183 29.5
A04p12420 Brassica napus HOM05D006858 ORTHO05D008767 2.9e-06 58.5 102 32.4
Duzib150G1285 Durio zibethinus HOM05D002737 ORTHO05D009499 3.8e-06 58.2 112 27.7
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 3.8e-06 58.2 92 32.6
TAR629G1995 Trochodendron aralioides HOM05D002737 ORTHO05D009499 3.8e-06 58.2 104 28.8
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 5.0e-06 57.8 171 26.9
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 5.0e-06 57.8 178 26.4
arahy.Tifrunner.gnm1.ann1.6PYW3K Arachis hypogaea HOM05D006819 ORTHO05D008763 6.5e-06 57.4 168 25.6
arahy.Tifrunner.gnm1.ann1.UYKR6J Arachis hypogaea HOM05D006819 ORTHO05D008763 6.5e-06 57.4 168 25.6
Gohir.D05G005900 Gossypium hirsutum HOM05D002737 ORTHO05D009499 6.5e-06 57.4 103 29.1
CARHR036700 Cardamine hirsuta HOM05D006503 ORTHO05D008116 8.5e-06 57.0 141 27.0


User provided reference genes

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