Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 5.1e-224 780.8 407 100.0
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.8e-123 446.8 328 72.0
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 6.7e-123 444.9 332 71.4
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 8.7e-123 444.5 332 72.3
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 5.7e-122 441.8 303 74.9
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 2.2e-121 439.9 333 70.3
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 4.8e-121 438.7 369 67.5
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 8.2e-121 438.0 279 78.5
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 4.1e-120 435.6 354 70.1
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 9.0e-120 434.5 335 69.6
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 2.6e-119 433.0 280 77.9
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 4.5e-119 432.2 334 70.7
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 4.5e-119 432.2 286 78.0
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 7.7e-119 431.4 275 79.3
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 1.3e-118 430.6 333 68.2
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 2.9e-118 429.5 287 76.0
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 3.8e-118 429.1 278 77.3
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 5.0e-118 428.7 282 75.5
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 1.1e-117 427.6 338 67.8
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.9e-117 426.8 280 75.7
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 7.2e-117 424.9 280 75.0
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 7.2e-117 424.9 278 77.3
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.2e-116 424.1 323 68.7
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 2.1e-116 423.3 322 68.3
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 4.6e-116 422.2 335 68.1
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 7.9e-116 421.4 334 67.4
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.1e-114 417.5 277 77.3
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 2.0e-114 416.8 328 67.4
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.5e-114 416.4 330 68.8
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 2.5e-114 416.4 324 69.4
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 3.3e-114 416.0 324 69.1
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 3.3e-114 416.0 279 75.6
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 4.3e-114 415.6 330 67.9
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 7.4e-114 414.8 334 67.1
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 2.4e-112 409.8 331 66.8
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 5.3e-112 408.7 289 73.4
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 9.1e-112 407.9 279 72.4
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.2e-111 407.5 308 67.5
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 1.5e-111 407.1 331 66.2
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 1.0e-110 404.4 279 73.8
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 1.3e-110 404.1 287 70.4
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 3.8e-110 402.5 284 70.1
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 6.5e-110 401.7 284 70.1
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 6.5e-110 401.7 289 73.0
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.1e-109 401.0 329 64.4
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 3.2e-109 399.4 338 62.1
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 9.4e-109 397.9 339 61.7
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 2.1e-108 396.7 284 68.3
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 2.7e-108 396.4 283 70.3
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 7.9e-108 394.8 284 68.0
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 7.9e-108 394.8 278 69.8
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.4e-107 394.0 396 58.6
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 1.4e-107 394.0 339 62.2
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.8e-107 393.7 294 67.0
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 6.7e-107 391.7 358 63.4
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.1e-106 391.0 331 63.4
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.1e-106 391.0 356 62.4
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 2.0e-106 390.2 329 62.6
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 2.8e-105 386.3 276 70.7
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 2.8e-105 386.3 280 70.4
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 4.8e-105 385.6 280 70.0
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 4.8e-105 385.6 281 70.1
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 8.2e-105 384.8 345 60.6
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.4e-104 384.0 344 62.8
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 5.3e-104 382.1 281 69.4
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 4.5e-103 379.0 335 60.3
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 5.0e-102 375.6 351 63.0
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 6.5e-102 375.2 276 69.6
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 3.6e-100 369.4 321 62.0
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 8.0e-100 368.2 256 71.1
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 3.0e-99 366.3 286 68.9
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 1.5e-98 364.0 307 65.1
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 2.0e-98 363.6 279 70.3
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 4.4e-98 362.5 250 74.4
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 5.7e-98 362.1 281 68.0
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 2.4e-96 356.7 330 62.7
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 7.7e-95 351.7 251 70.1
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 7.7e-95 351.7 277 66.4
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 1.0e-91 341.3 249 69.5
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 3.0e-91 339.7 278 66.5
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 7.0e-88 328.6 279 65.9
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 7.7e-87 325.1 277 62.5
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 5.0e-86 322.4 283 60.1
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 1.8e-83 313.9 338 56.8
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 8.8e-83 311.6 339 54.9
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.5e-82 310.8 338 54.4
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.0e-82 310.5 338 54.1
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 5.7e-82 308.9 284 57.0
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.3e-81 307.8 279 61.3
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 1.1e-80 304.7 207 75.4
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 2.7e-79 300.1 197 78.2
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 1.7e-78 297.4 278 55.8
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 5.5e-77 292.4 247 66.8
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 6.1e-76 288.9 279 59.5
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 7.5e-74 282.0 327 47.4
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.3e-73 278.9 275 52.0
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 2.4e-72 276.9 198 70.2
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 5.4e-72 275.8 270 52.2
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.3e-67 260.4 270 50.4
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 1.4e-64 251.1 259 54.4
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 2.3e-62 243.8 166 72.9
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 4.4e-58 229.6 206 60.7
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 4.4e-58 229.6 317 45.7
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.1e-55 220.7 197 58.4
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.1e-53 214.9 182 62.1
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 8.9e-43 178.7 114 78.9
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 1.3e-41 174.9 146 63.7
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 5.1e-38 162.9 114 74.6
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 9.0e-35 152.1 246 36.2
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 2.2e-33 147.5 185 48.6
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 1.7e-30 137.9 188 44.1
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 3.9e-30 136.7 187 45.5
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.8e-27 127.9 212 40.1
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.8e-27 127.9 106 61.3
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 4.0e-27 126.7 224 40.2
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 1.2e-26 125.2 72 81.9
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-26 124.8 214 40.2
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 2.0e-26 124.4 279 30.8
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 8.4e-25 119.0 79 78.5
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 1.2e-23 115.2 137 51.1
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.0e-22 112.1 69 78.3
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.3e-22 111.7 244 29.1
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 1.9e-21 107.8 78 67.9
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 9.6e-21 105.5 71 73.2
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.7e-20 103.6 67 74.6
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 4.8e-20 103.2 383 29.0
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 4.0e-19 100.1 90 53.3
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 1.0e-14 85.5 158 36.7
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 1.8e-14 84.7 130 40.0
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 6.9e-11 72.8 60 63.3
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.2e-10 72.0 38 84.2
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 7.6e-10 69.3 118 41.5
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 2.9e-09 67.4 57 66.7
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 5.0e-09 66.6 78 50.0
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 5.0e-09 66.6 60 60.0
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 1.9e-08 64.7 48 60.4
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 3.2e-08 63.9 140 33.6
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 1.6e-07 61.6 39 66.7


User provided reference genes

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