Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 9.8e-175 616.7 311 100.0
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.9e-171 604.7 311 98.7
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 4.4e-90 335.5 311 59.2
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 7.0e-88 328.2 311 57.6
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 1.6e-87 327.0 311 56.6
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.5e-85 320.5 311 56.6
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 2.5e-85 319.7 311 55.9
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.8e-83 313.5 310 53.5
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.5e-82 310.5 308 53.2
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 5.7e-82 308.5 311 55.0
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 2.8e-81 306.2 310 54.5
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 4.8e-81 305.4 311 53.7
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 1.1e-80 304.3 308 51.6
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 1.1e-80 304.3 311 52.4
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 1.8e-80 303.5 311 51.8
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.8e-80 303.5 311 54.3
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 7.0e-80 301.6 311 54.7
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 1.2e-79 300.8 307 52.8
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 1.2e-79 300.8 312 51.0
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 2.7e-79 299.7 311 53.7
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 2.7e-79 299.7 308 53.6
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 7.7e-79 298.1 311 52.1
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.8e-78 295.8 311 50.5
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 6.5e-78 295.0 308 52.3
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 8.5e-78 294.7 311 50.5
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 1.9e-77 293.5 313 50.8
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 2.5e-77 293.1 311 50.2
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 2.5e-77 293.1 317 52.1
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 3.2e-77 292.7 308 52.6
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 4.2e-77 292.4 299 53.5
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 7.2e-77 291.6 291 53.6
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.2e-76 290.8 313 51.8
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 2.1e-76 290.0 312 51.9
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 2.7e-76 289.7 317 50.5
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 6.1e-76 288.5 313 53.0
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 8.0e-76 288.1 313 50.5
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 3.0e-75 286.2 312 51.0
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 3.0e-75 286.2 313 50.8
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 4.0e-75 285.8 311 51.4
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 5.2e-75 285.4 312 51.0
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 8.8e-75 284.6 311 49.8
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.5e-74 283.9 306 50.3
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 2.0e-74 283.5 312 51.0
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 2.0e-74 283.5 311 50.2
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 3.4e-74 282.7 311 48.9
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 3.4e-74 282.7 311 50.2
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 4.4e-74 282.3 313 49.8
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 9.8e-74 281.2 311 50.8
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 1.3e-73 280.8 311 48.9
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 1.3e-73 280.8 314 50.0
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 1.3e-73 280.8 317 50.2
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 2.2e-73 280.0 311 48.9
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 4.9e-73 278.9 315 47.9
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 6.3e-73 278.5 311 50.5
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 8.3e-73 278.1 311 48.9
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 1.1e-72 277.7 311 48.6
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.4e-72 277.3 315 47.6
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 1.4e-72 277.3 307 48.9
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 3.1e-72 276.2 311 49.2
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 5.4e-72 275.4 305 49.2
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.5e-71 272.7 306 47.7
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 4.5e-71 272.3 311 48.9
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 7.7e-71 271.6 310 49.4
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.3e-70 270.8 306 47.4
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 1.7e-70 270.4 304 48.7
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.3e-70 270.0 291 49.1
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 8.6e-70 268.1 310 49.7
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 1.2e-68 264.2 343 46.1
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.6e-68 263.8 291 49.1
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 4.7e-68 262.3 325 46.2
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 2.6e-66 256.5 313 47.9
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 3.4e-66 256.1 311 46.3
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 2.2e-65 253.4 312 44.9
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 6.3e-65 251.9 306 49.0
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 1.4e-64 250.8 312 45.8
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 1.4e-64 250.8 312 44.2
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.6e-63 247.3 343 46.1
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 3.5e-63 246.1 312 43.9
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 5.9e-63 245.4 304 44.4
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 1.7e-62 243.8 312 43.9
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 5.0e-62 242.3 300 47.0
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 8.6e-62 241.5 313 42.8
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 1.9e-61 240.4 306 42.5
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 3.3e-61 239.6 312 43.3
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 9.5e-61 238.0 312 43.6
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 2.1e-60 236.9 311 45.0
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 2.1e-60 236.9 312 42.9
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 2.1e-60 236.9 312 42.9
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 2.8e-60 236.5 312 42.3
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 3.6e-60 236.1 312 42.9
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 6.1e-60 235.3 312 42.9
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 5.2e-59 232.3 302 43.4
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 2.0e-58 230.3 312 42.3
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 2.0e-58 230.3 306 42.5
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 4.9e-57 225.7 295 44.7
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 1.4e-56 224.2 334 40.1
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.0e-54 216.5 315 40.0
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 1.9e-53 213.8 303 44.2
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 1.8e-51 207.2 272 45.2
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 7.5e-50 201.8 209 54.1
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.3e-49 201.1 207 55.1
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 8.3e-49 198.4 236 49.2
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 6.6e-46 188.7 225 47.6
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 9.9e-42 174.9 307 35.8
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 7.8e-39 165.2 284 37.3
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 2.4e-35 153.7 301 33.2
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 4.4e-34 149.4 297 33.3
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 6.4e-33 145.6 311 33.1
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.9e-29 134.0 157 46.5
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 5.6e-29 132.5 327 30.3
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 9.6e-29 131.7 215 39.1
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 9.6e-29 131.7 160 45.0
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.7e-25 120.9 203 35.0
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 3.2e-24 116.7 190 37.4
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 3.2e-24 116.7 190 37.4
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 6.2e-20 102.4 181 38.7
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 6.9e-19 99.0 90 48.9
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 1.5e-18 97.8 317 27.8
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.4e-16 90.5 80 50.0
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.8e-14 84.3 121 40.5
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 1.8e-14 84.3 280 27.1
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 1.4e-11 74.7 69 49.3
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 1.4e-11 74.7 100 41.0
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.3e-09 68.2 127 37.8
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 3.9e-06 56.6 68 48.5


User provided reference genes

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