Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 4.0e-63 244.6 123 100.0
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.7e-27 125.6 96 64.6
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 1.0e-26 123.6 99 62.6
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 4.3e-25 118.2 99 60.6
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.3e-25 118.2 102 61.8
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 4.3e-25 118.2 106 62.3
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 5.7e-25 117.9 104 60.6
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 5.7e-25 117.9 108 61.1
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 1.6e-24 116.3 102 60.8
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 1.6e-24 116.3 103 62.1
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 2.8e-24 115.5 100 61.0
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.7e-24 115.2 101 61.4
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 4.8e-24 114.8 99 58.6
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 1.1e-23 113.6 99 60.6
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.8e-23 112.8 103 57.3
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 1.8e-23 112.8 109 56.9
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 2.4e-23 112.5 101 58.4
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 3.1e-23 112.1 101 57.4
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 5.3e-23 111.3 99 57.6
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 3.4e-22 108.6 108 54.6
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 4.5e-22 108.2 78 64.1
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 7.6e-22 107.5 100 59.0
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.0e-21 107.1 100 56.0
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.7e-21 106.3 99 55.6
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 6.5e-21 104.4 105 56.2
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 8.5e-21 104.0 82 64.6
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 2.5e-20 102.4 100 56.0
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 2.5e-20 102.4 77 62.3
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 3.2e-20 102.1 100 56.0
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 4.2e-20 101.7 100 56.0
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 1.2e-19 100.1 68 69.1
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.2e-19 100.1 64 70.3
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 1.6e-19 99.8 96 53.1
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 3.6e-19 98.6 68 67.6
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 4.6e-19 98.2 61 73.8
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 1.4e-18 96.7 99 51.5
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 1.8e-18 96.3 58 77.6
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 3.9e-18 95.1 84 54.8
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 5.1e-18 94.7 57 78.9
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 8.8e-18 94.0 59 72.9
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 1.1e-17 93.6 106 52.8
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 1.1e-17 93.6 75 60.0
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 1.5e-17 93.2 67 65.7
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 1.5e-17 93.2 59 72.9
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 1.9e-17 92.8 101 49.5
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 1.9e-17 92.8 57 75.4
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 1.9e-17 92.8 60 71.7
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 2.5e-17 92.4 78 59.0
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 2.5e-17 92.4 70 65.7
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 2.5e-17 92.4 97 50.5
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 7.4e-17 90.9 61 68.9
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 7.4e-17 90.9 61 72.1
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 9.7e-17 90.5 53 77.4
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 9.7e-17 90.5 61 67.2
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 1.3e-16 90.1 61 68.9
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.3e-16 90.1 70 62.9
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 1.3e-16 90.1 68 60.3
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 1.3e-16 90.1 70 61.4
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 2.8e-16 89.0 75 56.0
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 2.8e-16 89.0 57 71.9
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 4.8e-16 88.2 57 71.9
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 4.8e-16 88.2 58 69.0
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 4.8e-16 88.2 58 67.2
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.1e-15 87.0 59 71.2
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.8e-15 86.3 63 61.9
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 1.8e-15 86.3 58 67.2
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.1e-15 85.5 63 60.3
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 3.1e-15 85.5 63 60.3
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 4.1e-15 85.1 67 61.2
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 6.9e-15 84.3 67 59.7
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 6.9e-15 84.3 58 69.0
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 9.1e-15 84.0 53 73.6
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.2e-14 83.6 68 57.4
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.5e-14 83.2 61 65.6
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.5e-14 83.2 85 47.1
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 2.0e-14 82.8 83 53.0
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 3.4e-14 82.0 53 73.6
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 7.7e-14 80.9 61 65.6
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 1.4e-12 76.6 99 46.5
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 1.4e-12 76.6 62 58.1
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 1.6e-11 73.2 59 61.0
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 2.1e-11 72.8 59 55.9
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.1e-11 72.8 63 55.6
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.1e-11 72.8 63 55.6
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 2.1e-11 72.8 59 54.2
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 7.9e-11 70.9 59 52.5
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 7.9e-11 70.9 62 54.8
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 7.9e-11 70.9 62 54.8
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 7.9e-11 70.9 62 54.8
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 7.9e-11 70.9 62 54.8
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 7.9e-11 70.9 62 54.8
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 7.9e-11 70.9 62 54.8
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 1.0e-10 70.5 62 54.8
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.4e-10 70.1 101 45.5
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.4e-10 70.1 62 51.6
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 1.8e-10 69.7 59 52.5
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 3.0e-10 68.9 59 52.5
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 3.9e-10 68.6 59 50.8
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 3.9e-10 68.6 62 53.2
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 3.9e-10 68.6 101 43.6
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 2.0e-09 66.2 60 55.0
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.0e-09 66.2 32 96.9
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 5.7e-09 64.7 67 49.3
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 3.1e-07 58.9 66 42.4
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 5.3e-07 58.2 53 54.7
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.5e-06 56.6 59 47.5
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 2.0e-06 56.2 52 53.8
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 2.6e-06 55.8 66 50.0
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 4.5e-06 55.1 104 39.4


User provided reference genes

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