Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 8.3e-44 179.9 84 100.0
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 9.8e-37 156.4 85 83.5
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 2.9e-36 154.8 86 83.7
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 2.9e-36 154.8 84 84.5
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 2.9e-36 154.8 84 83.3
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 8.3e-36 153.3 84 84.5
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 1.1e-35 152.9 86 82.6
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 1.8e-35 152.1 81 82.7
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 3.2e-35 151.4 83 83.1
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 3.2e-35 151.4 84 83.3
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 7.0e-35 150.2 84 77.4
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 7.0e-35 150.2 84 82.1
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 9.2e-35 149.8 86 81.4
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 9.2e-35 149.8 83 80.7
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 9.2e-35 149.8 87 78.2
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 1.2e-34 149.4 84 81.0
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 1.2e-34 149.4 86 79.1
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 1.2e-34 149.4 87 81.6
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 2.0e-34 148.7 87 79.3
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 2.7e-34 148.3 84 78.6
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 2.7e-34 148.3 87 80.5
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 2.7e-34 148.3 84 78.6
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 2.7e-34 148.3 84 81.0
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 2.7e-34 148.3 84 79.8
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 3.5e-34 147.9 84 81.0
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 3.5e-34 147.9 84 79.8
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 3.5e-34 147.9 86 79.1
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 4.6e-34 147.5 84 79.8
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.6e-34 147.5 84 79.8
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.6e-34 147.5 84 79.8
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 4.6e-34 147.5 83 84.3
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 5.9e-34 147.1 84 81.0
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 5.9e-34 147.1 84 81.0
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 7.8e-34 146.7 84 79.8
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 7.8e-34 146.7 84 79.8
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 7.8e-34 146.7 84 78.6
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 7.8e-34 146.7 84 78.6
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.0e-33 146.4 84 79.8
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.0e-33 146.4 84 79.8
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.0e-33 146.4 84 79.8
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 1.0e-33 146.4 83 78.3
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 1.3e-33 146.0 86 76.7
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.3e-33 146.0 84 79.8
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 1.7e-33 145.6 84 77.4
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 3.0e-33 144.8 80 81.2
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 3.0e-33 144.8 84 78.6
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 3.9e-33 144.4 87 77.0
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 3.9e-33 144.4 86 76.7
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 3.9e-33 144.4 84 75.0
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 5.0e-33 144.1 84 77.4
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 5.0e-33 144.1 84 77.4
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 5.0e-33 144.1 84 77.4
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 5.0e-33 144.1 84 77.4
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 5.0e-33 144.1 86 73.3
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 5.0e-33 144.1 86 75.6
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 6.6e-33 143.7 82 76.8
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 8.6e-33 143.3 87 77.0
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 8.6e-33 143.3 86 75.6
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 8.6e-33 143.3 84 76.2
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 8.6e-33 143.3 84 76.2
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 1.1e-32 142.9 84 77.4
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.5e-32 142.5 84 77.4
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 1.5e-32 142.5 84 77.4
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.5e-32 142.5 84 76.2
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 1.5e-32 142.5 84 73.8
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 1.5e-32 142.5 87 73.6
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 1.5e-32 142.5 84 76.2
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 1.5e-32 142.5 84 77.4
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 1.9e-32 142.1 84 76.2
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.9e-32 142.1 86 77.9
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 1.9e-32 142.1 87 77.0
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 1.9e-32 142.1 86 75.6
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 2.5e-32 141.7 84 77.4
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 2.5e-32 141.7 85 77.6
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 3.3e-32 141.4 85 77.6
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 4.3e-32 141.0 83 75.9
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 4.3e-32 141.0 84 73.8
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 4.3e-32 141.0 82 76.8
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 4.3e-32 141.0 84 76.2
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 4.3e-32 141.0 81 76.5
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 5.6e-32 140.6 85 77.6
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 9.5e-32 139.8 84 75.0
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 1.2e-31 139.4 84 77.4
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 2.1e-31 138.7 84 76.2
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 2.1e-31 138.7 84 76.2
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.1e-31 138.7 84 75.0
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 2.8e-31 138.3 84 73.8
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 2.8e-31 138.3 84 75.0
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 3.6e-31 137.9 81 77.8
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 3.6e-31 137.9 84 72.6
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 3.6e-31 137.9 84 72.6
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 4.7e-31 137.5 81 75.3
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 4.7e-31 137.5 81 75.3
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 6.2e-31 137.1 81 76.5
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 8.0e-31 136.7 85 74.1
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 8.0e-31 136.7 85 75.3
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 1.1e-30 136.3 81 74.1
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 1.1e-30 136.3 84 73.8
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 1.1e-30 136.3 84 73.8
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.1e-30 136.3 83 72.3
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 1.4e-30 136.0 83 73.5
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 1.4e-30 136.0 82 73.2
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 1.8e-30 135.6 70 82.9
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 2.3e-30 135.2 84 72.6
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 2.3e-30 135.2 83 69.9
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 2.3e-30 135.2 84 71.4
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 2.3e-30 135.2 84 71.4
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 3.1e-30 134.8 84 72.6
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 3.1e-30 134.8 81 75.3
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 4.0e-30 134.4 84 73.8
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 5.2e-30 134.0 85 72.9
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 5.2e-30 134.0 84 72.6
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 6.8e-30 133.7 83 69.9
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 8.9e-30 133.3 84 72.6
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 8.9e-30 133.3 80 73.8
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 8.9e-30 133.3 77 76.6
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 8.9e-30 133.3 87 72.4
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 8.9e-30 133.3 84 70.2
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 1.2e-29 132.9 83 71.1
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 2.0e-29 132.1 86 68.6
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 2.6e-29 131.7 84 73.8
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.3e-28 129.4 78 71.8
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 2.2e-28 128.6 84 71.4
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 4.9e-28 127.5 68 79.4
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 4.9e-28 127.5 68 79.4
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 3.2e-27 124.8 83 68.7
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 4.1e-27 124.4 74 74.3
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 4.1e-27 124.4 66 78.8
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 5.4e-27 124.0 74 77.0
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 2.7e-26 121.7 84 70.2
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 4.6e-26 120.9 62 82.3
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 3.9e-25 117.9 70 71.4
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 2.5e-24 115.2 58 86.2
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 1.2e-23 112.8 54 87.0
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 2.8e-23 111.7 54 88.9
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 6.8e-22 107.1 61 73.8
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 2.0e-21 105.5 51 86.3
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 8.3e-20 100.1 60 65.0
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 6.0e-18 94.0 62 66.1
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 3.3e-16 88.2 59 61.0
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 3.6e-15 84.7 45 80.0


User provided reference genes

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