Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 3786.9 1890 100.0
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1861.7 1953 52.2
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1827.0 1940 52.0
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1824.7 1944 52.6
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1800.8 1949 51.7
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1799.3 1984 51.0
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1768.4 1956 50.1
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1755.0 1921 50.4
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1728.8 1938 50.5
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1727.2 1984 48.9
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1726.1 1936 49.7
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1715.3 1931 49.8
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1706.8 1939 49.8
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1702.6 1946 49.1
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1686.8 1927 49.5
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1686.4 1932 49.1
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1682.5 1949 48.8
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1663.3 1930 48.7
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1659.8 1934 48.8
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1657.9 1950 48.4
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1654.8 1932 48.1
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1654.4 1926 48.4
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1651.3 1922 48.6
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1649.8 1951 48.1
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1647.5 1942 48.5
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1647.5 1942 48.3
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1645.6 1949 47.8
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1644.4 1928 48.4
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1639.0 1958 47.8
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1638.6 1931 48.6
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1634.4 1928 48.2
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1610.5 1946 46.7
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1607.8 1937 47.2
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1599.3 1956 47.4
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1594.7 1953 46.5
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1588.5 1960 46.1
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1587.8 1948 46.9
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1572.8 1742 50.4
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1565.1 1920 47.3
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1554.7 1942 46.8
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1550.8 1923 46.7
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1537.7 1941 46.4
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1529.2 1938 45.7
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1512.7 1920 45.3
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1511.5 1941 45.4
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1506.5 1954 46.6
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1498.0 1955 45.3
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1497.3 1938 45.7
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1489.6 1951 44.7
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1481.8 1947 44.9
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1481.5 1930 45.4
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1479.5 1929 45.3
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1479.2 1920 44.9
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1478.4 1938 45.0
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1476.5 1942 44.7
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1476.1 1931 45.2
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1476.1 1920 44.8
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1475.7 1927 44.7
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1473.0 1950 44.2
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1472.6 1947 44.4
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1470.3 1929 44.9
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1467.6 1925 45.3
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1459.1 1942 44.1
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1456.8 1967 44.7
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1455.3 1916 45.8
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1448.0 1909 44.1
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1431.8 2021 43.1
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1426.8 1940 43.7
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1407.5 1961 43.2
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1379.4 1740 46.3
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1379.4 1924 43.3
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1378.6 1740 46.2
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1375.1 1926 43.3
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1373.2 1917 43.1
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1366.7 1921 43.1
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1362.1 1890 43.8
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1354.0 1910 42.7
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1354.0 1928 43.2
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1353.6 1925 42.5
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1349.3 1921 43.0
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1349.3 1927 42.9
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1345.5 1917 42.8
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1340.5 1876 42.8
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1313.5 1911 42.1
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1310.4 1917 42.3
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1310.4 1917 42.3
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1310.0 1916 42.3
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1307.7 1920 41.9
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1301.6 1915 41.8
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1182.9 1814 40.6
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1135.2 2026 37.7
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1117.8 1378 46.7
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1111.7 1379 46.3
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 2.3e-290 1003.4 1945 35.9
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 7.1e-284 981.9 1695 38.6
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 2.9e-277 959.9 1955 33.7
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 1.1e-276 958.0 1214 45.7
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 3.5e-251 873.2 2070 32.1
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.6e-243 846.3 1693 34.8
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 1.6e-211 741.5 1413 34.5
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 1.4e-202 711.8 2086 29.4
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 3.8e-197 693.7 2034 29.4
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 1.1e-164 585.9 1900 28.4
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 3.6e-147 527.7 1887 25.9
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 1.9e-143 515.4 587 49.6
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 2.9e-136 491.5 1207 31.2
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.3e-115 422.9 1661 26.1
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.9e-109 401.4 346 58.7
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.8e-107 394.4 442 49.8
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.5e-105 387.9 1137 29.5
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.4e-100 371.3 314 58.0
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 4.0e-93 348.2 256 65.6
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.2e-86 326.6 302 52.6
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.5e-79 303.1 210 69.0
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 7.2e-79 300.8 186 78.5
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 2.3e-77 295.8 512 37.3
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 7.5e-76 290.8 187 72.2
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 1.3e-64 253.4 186 63.4
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 2.9e-59 235.7 252 51.6
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 6.8e-53 214.5 228 49.6
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.9e-50 206.5 201 53.2
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 3.5e-49 202.2 180 57.2
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 1.3e-48 200.3 308 40.6
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 6.9e-37 161.4 316 35.4
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 2.5e-31 142.9 275 34.5
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 3.6e-30 139.0 83 75.9
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 8.4e-27 127.9 369 26.0
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 3.2e-26 125.9 226 34.5
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 9.3e-26 124.4 592 23.5
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 2.8e-22 112.8 67 80.6
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 8.1e-22 111.3 67 79.1
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 1.7e-19 103.6 62 77.4
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 1.7e-19 103.6 63 81.0
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 8.4e-19 101.3 66 74.2
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.1e-18 100.9 260 29.6
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-17 95.5 118 41.5
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 4.6e-17 95.5 110 48.2
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.1e-15 90.9 68 61.8
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 1.8e-13 83.6 125 41.6
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 6.9e-13 81.6 55 70.9
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 2.2e-11 76.6 56 69.6
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 7.4e-07 61.6 46 58.7


User provided reference genes

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