Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 8.4e-213 743.4 375 100.0
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 1.3e-120 437.2 380 58.9
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 5.6e-116 421.8 371 59.3
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 8.1e-115 417.9 360 59.4
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 2.3e-114 416.4 373 58.2
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 8.9e-114 414.5 387 58.1
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 2.0e-113 413.3 362 56.6
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 2.7e-110 402.9 363 57.0
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 6.0e-110 401.7 386 56.7
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 5.1e-109 398.7 357 58.0
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 3.3e-108 396.0 365 57.5
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 3.3e-108 396.0 361 56.0
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 9.6e-108 394.4 374 55.3
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 9.6e-108 394.4 368 55.2
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 1.6e-107 393.7 367 55.6
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 8.1e-107 391.3 385 55.3
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 2.6e-105 386.3 358 54.5
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 2.6e-105 386.3 387 55.0
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 9.9e-105 384.4 379 55.4
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 3.8e-104 382.5 376 54.3
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 1.4e-103 380.6 377 54.1
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 3.2e-103 379.4 377 54.1
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 7.1e-103 378.3 377 53.8
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.3e-101 374.0 379 50.9
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 6.6e-101 371.7 376 54.0
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 1.6e-99 367.1 344 54.4
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 2.8e-99 366.3 366 51.9
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 4.8e-99 365.5 368 54.1
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 1.1e-98 364.4 378 52.9
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 5.3e-98 362.1 390 50.3
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 5.3e-98 362.1 409 48.2
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 6.9e-98 361.7 385 50.6
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 1.5e-97 360.5 377 50.7
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 2.6e-97 359.8 363 54.0
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 2.9e-96 356.3 364 53.6
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 3.8e-96 355.9 361 52.4
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 4.9e-96 355.5 380 51.3
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.4e-95 354.0 390 50.5
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 2.4e-95 353.2 362 50.3
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 4.2e-95 352.4 362 52.5
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 9.3e-95 351.3 367 52.0
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 9.3e-95 351.3 361 52.1
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 9.3e-95 351.3 435 46.4
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 2.3e-93 346.7 358 50.6
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 2.3e-93 346.7 358 50.6
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 1.5e-92 344.0 413 46.7
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 1.9e-92 343.6 363 48.8
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 1.3e-91 340.9 381 47.2
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 1.6e-91 340.5 392 48.0
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 8.1e-91 338.2 454 43.2
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 1.4e-90 337.4 384 46.6
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 9.0e-90 334.7 366 48.9
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 9.9e-89 331.3 361 49.6
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 1.3e-88 330.9 366 48.6
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 1.4e-87 327.4 337 51.3
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 5.4e-87 325.5 345 52.5
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 2.1e-86 323.6 396 45.5
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 6.0e-86 322.0 377 46.4
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 6.0e-86 322.0 389 45.8
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 7.9e-86 321.6 400 46.8
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 1.8e-85 320.5 415 44.1
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 3.9e-85 319.3 358 49.2
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 6.7e-85 318.5 345 50.7
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 1.6e-83 313.9 385 47.0
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 2.8e-83 313.2 376 47.3
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 8.1e-83 311.6 364 47.0
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 1.1e-82 311.2 387 45.7
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 1.1e-82 311.2 383 47.3
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 2.4e-82 310.1 375 45.9
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 3.1e-82 309.7 359 46.8
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 1.0e-80 304.7 370 45.4
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 1.7e-80 303.9 358 45.0
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 2.2e-80 303.5 282 56.0
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 2.5e-79 300.1 314 48.7
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 7.9e-78 295.0 426 42.3
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 1.8e-77 293.9 360 46.1
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 1.1e-76 291.2 349 46.1
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 1.9e-76 290.4 306 51.0
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 3.7e-75 286.2 376 43.9
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 3.7e-75 286.2 371 45.0
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 1.8e-74 283.9 326 45.7
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 4.0e-74 282.7 457 38.7
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 5.3e-74 282.3 381 44.6
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 1.2e-73 281.2 369 43.6
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 3.4e-73 279.6 357 42.6
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 4.5e-73 279.3 294 48.6
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 1.0e-72 278.1 279 53.0
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 4.2e-71 272.7 366 42.6
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 1.8e-66 257.3 299 47.5
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 1.8e-66 257.3 299 47.5
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 2.1e-62 243.8 329 44.1
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.9e-55 220.7 295 46.1
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 8.8e-53 211.8 415 34.7
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 1.3e-51 208.0 176 56.2
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 4.2e-47 193.0 181 50.3
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 1.4e-42 177.9 291 41.6
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 3.1e-42 176.8 252 39.7
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 1.0e-40 171.8 162 49.4
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 3.2e-39 166.8 159 56.0
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 1.2e-38 164.9 146 52.1
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 3.6e-38 163.3 170 53.5
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 1.1e-31 141.7 124 58.9
Pp3c7_6690 Physcomitrium patens HOM05D007038 ORTHO05D008893 9.8e-28 128.6 365 27.1
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 1.3e-24 118.2 146 45.2
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 2.3e-24 117.5 146 45.9
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 4.4e-20 103.2 83 56.6
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 4.4e-20 103.2 83 56.6
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 8.3e-19 99.0 117 47.9
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 3.2e-18 97.1 140 39.3
HPP92_020432 Vanilla planifolia HOM05D000367 ORTHO05D008893 5.4e-10 69.7 97 45.4
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 2.1e-06 57.8 59 45.8


User provided reference genes

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