Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 4.4e-142 508.1 281 100.0
Sc14g0000670 Simmondsia chinensis HOM05D051806 ORTHO05D003571 6.6e-37 158.7 195 57.4
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 9.9e-17 91.7 222 31.5
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 1.2e-14 84.7 100 44.0
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 1.6e-14 84.3 94 47.9
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 1.6e-14 84.3 94 47.9
Sc18g0002230 Simmondsia chinensis HOM05D003238 ORTHO05D003571 2.1e-14 84.0 349 28.9
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.7e-14 83.6 227 31.7
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 7.9e-14 82.0 213 28.6
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 5.1e-13 79.3 221 28.5
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 6.7e-13 79.0 221 28.5
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 2.5e-12 77.0 221 29.0
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 4.3e-12 76.3 233 29.6
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 7.4e-12 75.5 99 44.4
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 9.6e-12 75.1 202 28.7
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 9.6e-12 75.1 221 28.5
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 2.1e-11 73.9 215 28.4
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 2.1e-11 73.9 217 27.6
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.1e-11 73.9 230 28.7
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.7e-11 73.2 101 43.6
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 6.2e-11 72.4 225 27.1
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 6.2e-11 72.4 225 27.1
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-10 71.6 87 47.1
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.8e-10 70.9 87 47.1
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 3.1e-10 70.1 92 41.3
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-09 67.8 222 27.9
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.0e-09 67.4 87 46.0
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 4.5e-09 66.2 205 29.8
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 4.5e-09 66.2 57 59.6
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.6e-09 65.5 87 44.8
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 9.9e-09 65.1 275 25.1
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 9.9e-09 65.1 86 43.0
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 1.3e-08 64.7 170 31.8
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 1.7e-08 64.3 232 26.3
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 2.2e-08 63.9 64 50.0
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 2.9e-08 63.5 57 57.9
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 3.8e-08 63.2 222 27.5
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 4.9e-08 62.8 262 34.0
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 4.9e-08 62.8 68 50.0
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 8.4e-08 62.0 93 41.9
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.1e-07 61.6 49 59.2
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.1e-07 61.6 49 59.2
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 1.4e-07 61.2 69 49.3
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 1.9e-07 60.8 94 38.3
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.9e-07 60.8 54 59.3
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.4e-07 60.5 48 58.3
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.2e-07 60.1 37 75.7
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 3.2e-07 60.1 227 26.9
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 4.2e-07 59.7 46 63.0
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 4.2e-07 59.7 45 64.4
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 5.5e-07 59.3 70 50.0
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 5.5e-07 59.3 49 57.1
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 7.1e-07 58.9 53 52.8
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 7.1e-07 58.9 53 52.8
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 9.3e-07 58.5 53 52.8
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.1e-06 57.4 277 24.2
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 2.7e-06 57.0 172 27.3
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 2.7e-06 57.0 262 25.2
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.5e-06 56.6 244 23.4
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 3.5e-06 56.6 82 37.8
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.5e-06 56.6 59 54.2
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 3.5e-06 56.6 47 57.4
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 4.6e-06 56.2 52 57.7
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 6.0e-06 55.8 221 30.8
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.9e-06 55.5 65 52.3


User provided reference genes

Program Settings