Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0000080 Simmondsia chinensis HOM05D003638 ORTHO05D003202 1.2e-89 333.2 169 100.0
Potri.018G114500 Populus trichocarpa HOM05D003638 ORTHO05D003202 5.6e-23 111.7 176 46.0
Ciclev10009499m.g Citrus clementina HOM05D003638 ORTHO05D003202 5.2e-21 105.1 168 45.2
EL10Ac8g18824 Beta vulgaris HOM05D003638 ORTHO05D003202 8.9e-21 104.4 171 45.0
Duzib168G1473 Durio zibethinus HOM05D003638 ORTHO05D003202 8.9e-21 104.4 168 45.2
Cpa.g.sc46.85 Carica papaya HOM05D003638 ORTHO05D003202 1.2e-20 104.0 170 48.2
TWI63G0270 Tripterygium wilfordii HOM05D003638 ORTHO05D003202 1.5e-20 103.6 168 45.8
Ah.14g078720 Amaranthus hybridus HOM05D003638 ORTHO05D003202 2.0e-20 103.2 175 44.0
Thecc.09G141300 Theobroma cacao HOM05D003638 ORTHO05D003202 2.6e-20 102.8 168 46.4
Dinv41427 Davidia involucrata HOM05D003638 ORTHO05D003202 4.4e-20 102.1 176 46.6
CANSAT11G2120 Cannabis sativa HOM05D003638 ORTHO05D003202 5.8e-20 101.7 173 42.2
Manes.06G041300 Manihot esculenta HOM05D003638 ORTHO05D003202 5.8e-20 101.7 173 44.5
Sabra18G0097400 Salix brachista HOM05D003638 ORTHO05D003202 9.8e-20 100.9 173 43.9
CiPaw.16G118000 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.7e-19 100.1 171 45.6
Potri.006G190300 Populus trichocarpa HOM05D003638 ORTHO05D003202 3.7e-19 99.0 183 43.2
vmacro21884 Vaccinium macrocarpon HOM05D003638 ORTHO05D003202 4.9e-19 98.6 170 41.2
GSVIVG01012890001 Vitis vinifera HOM05D003638 ORTHO05D003202 8.3e-19 97.8 105 56.2
Glyma.09G096300 Glycine max HOM05D003638 ORTHO05D003202 1.1e-18 97.4 172 41.9
Gohir.D13G208400 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.4e-18 97.1 168 42.9
Actinidia21912 Actinidia chinensis HOM05D003638 ORTHO05D003202 1.9e-18 96.7 170 42.4
Gohir.A13G203100 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.9e-18 96.7 168 41.1
Cfa020896 Carpinus fangiana HOM05D003638 ORTHO05D003202 2.4e-18 96.3 171 43.9
Actinidia04244 Actinidia chinensis HOM05D003638 ORTHO05D003202 4.1e-18 95.5 171 40.9
FAN26G1151 Fragaria x ananassa HOM05D003638 ORTHO05D003202 5.4e-18 95.1 173 41.0
FAN23G0723 Fragaria x ananassa HOM05D003638 ORTHO05D003202 7.0e-18 94.7 173 41.0
Gorai.013G237500 Gossypium raimondii HOM05D003638 ORTHO05D003202 7.0e-18 94.7 173 41.0
RcHm_v2.0_Chr2g0086711 Rosa chinensis HOM05D003638 ORTHO05D003202 7.0e-18 94.7 169 40.8
TAR383G0618 Trochodendron aralioides HOM05D003638 ORTHO05D003202 1.2e-17 94.0 169 43.8
MELO3C004441.2 Cucumis melo HOM05D003638 ORTHO05D003202 1.6e-17 93.6 174 44.3
Dinv42915 Davidia involucrata HOM05D003638 ORTHO05D003202 2.7e-17 92.8 169 43.8
Dinv43185 Davidia involucrata HOM05D003638 ORTHO05D003202 2.7e-17 92.8 169 43.8
QL02p091197 Quercus lobata HOM05D003638 ORTHO05D003202 2.7e-17 92.8 176 43.2
Cc06_g07440 Coffea canephora HOM05D003638 ORTHO05D003202 3.5e-17 92.4 168 44.6
Dinv22136 Davidia involucrata HOM05D003638 ORTHO05D003202 3.5e-17 92.4 169 44.4
CSS0017335 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 4.6e-17 92.0 168 42.3
ClCG02G017240 Citrullus lanatus HOM05D003638 ORTHO05D003202 6.0e-17 91.7 174 40.2
arahy.Tifrunner.gnm1.ann1.ZD4V4J Arachis hypogaea HOM05D003638 ORTHO05D003202 1.0e-16 90.9 169 41.4
MD02G1013200 Malus domestica HOM05D003638 ORTHO05D003202 1.0e-16 90.9 173 40.5
FvH4_1g01750 Fragaria vesca HOM05D003638 ORTHO05D003202 1.3e-16 90.5 173 39.9
Hma1.2p1_0182F.1_g080450 Hydrangea macrophylla HOM05D003638 ORTHO05D003202 1.7e-16 90.1 168 42.9
MBI15_g25866_MAGBIO Magnolia biondii HOM05D003638 ORTHO05D003202 2.3e-16 89.7 172 43.6
TAR626G0601 Trochodendron aralioides HOM05D003638 ORTHO05D003202 2.3e-16 89.7 169 42.0
Hund09319 Selenicereus undatus HOM05D003638 ORTHO05D003202 3.9e-16 89.0 168 39.9
FAN19G2555 Fragaria x ananassa HOM05D003638 ORTHO05D003202 5.1e-16 88.6 173 39.3
FAN28G0590 Fragaria x ananassa HOM05D003638 ORTHO05D003202 5.1e-16 88.6 173 39.3
CiPaw.15G182800 Carya illinoinensis HOM05D003638 ORTHO05D003202 6.6e-16 88.2 172 40.7
MD15G1160000 Malus domestica HOM05D003638 ORTHO05D003202 6.6e-16 88.2 173 39.3
Sed0014564 Sechium edule HOM05D003638 ORTHO05D003202 6.6e-16 88.2 173 40.5
THA.LOC104808922 Tarenaya hassleriana HOM05D003638 ORTHO05D003202 1.1e-15 87.4 172 39.5
Oeu051707.1 Olea europaea HOM05D003638 ORTHO05D003202 1.5e-15 87.0 171 42.1
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 1.9e-15 86.7 168 42.3
CSS0003684 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 2.5e-15 86.3 170 40.6
CsaV3_2G003550 Cucumis sativus L. HOM05D003638 ORTHO05D003202 2.5e-15 86.3 173 41.0
Duzib187G0526 Durio zibethinus HOM05D003638 ORTHO05D003202 2.5e-15 86.3 169 42.6
Sopen07g003210 Solanum pennellii HOM05D003638 ORTHO05D003202 2.5e-15 86.3 168 40.5
CSS0018942 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 4.3e-15 85.5 170 40.6
Os02g0798200 Oryza sativa ssp. japonica HOM05D003638 ORTHO05D003202 4.3e-15 85.5 177 38.4
Sp3g28870 Schrenkiella parvula HOM05D003638 ORTHO05D003202 5.6e-15 85.1 170 41.2
Solyc07g007160.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 5.6e-15 85.1 168 39.9
PGSC0003DMG401030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 5.6e-15 85.1 169 41.4
Glyma.15G201800 Glycine max HOM05D003638 ORTHO05D003202 7.3e-15 84.7 174 41.4
Gohir.A08G095362 Gossypium hirsutum HOM05D003638 ORTHO05D003202 7.3e-15 84.7 168 41.7
Lj6g0008260 Lotus japonicus HOM05D003638 ORTHO05D003202 9.5e-15 84.3 169 42.0
Duzib150G0024 Durio zibethinus HOM05D003638 ORTHO05D003202 1.6e-14 83.6 168 40.5
AL3G47340 Arabidopsis lyrata HOM05D003638 ORTHO05D003202 2.1e-14 83.2 170 40.0
Eucgr.C04088 Eucalyptus grandis HOM05D003638 ORTHO05D003202 2.1e-14 83.2 171 42.1
Thhalv10022864m.g Eutrema salsugineum HOM05D003638 ORTHO05D003202 2.8e-14 82.8 171 39.8
BcaC06g36068 Brassica carinata HOM05D003638 ORTHO05D003202 4.7e-14 82.0 170 38.8
Lalb_Chr23g0275841 Lupinus albus HOM05D003638 ORTHO05D003202 4.7e-14 82.0 168 39.3
Medtr2g461020 Medicago truncatula HOM05D003638 ORTHO05D003202 8.1e-14 81.3 168 39.3
BcaB03g16305 Brassica carinata HOM05D003638 ORTHO05D003202 1.8e-13 80.1 170 38.8
BcaB03g16307 Brassica carinata HOM05D003638 ORTHO05D003202 1.8e-13 80.1 170 38.8
Nitab4.5_0001555g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 5.2e-13 78.6 173 39.3
C07p08290 Brassica napus HOM05D003638 ORTHO05D003202 6.8e-13 78.2 170 38.2
BolC7t41242H Brassica oleracea HOM05D003638 ORTHO05D003202 6.8e-13 78.2 170 38.2
BraA07t28311Z Brassica rapa HOM05D003638 ORTHO05D003202 6.8e-13 78.2 170 38.2
Peaxi162Scf00108g00110 Petunia axillaris HOM05D003638 ORTHO05D003202 6.8e-13 78.2 175 38.9
Oeu055917.1 Olea europaea HOM05D003638 ORTHO05D003202 8.9e-13 77.8 104 49.0
Peaxi162Scf00391g00019 Petunia axillaris HOM05D003638 ORTHO05D003202 8.9e-13 77.8 176 39.8
A07p05140 Brassica napus HOM05D003638 ORTHO05D003202 1.2e-12 77.4 177 37.9
Rhsim01G0052400 Rhododendron simsii HOM05D003638 ORTHO05D003202 1.5e-12 77.0 169 37.9
AT2G15580 Arabidopsis thaliana HOM05D003638 ORTHO05D003202 2.0e-12 76.6 170 38.8
CARHR105850 Cardamine hirsuta HOM05D003638 ORTHO05D003202 2.0e-12 76.6 170 38.8
Sc08g0005730 Simmondsia chinensis HOM05D003638 ORTHO05D003202 2.0e-12 76.6 103 49.5
Carub.0003s2935 Capsella rubella HOM05D003638 ORTHO05D003202 2.6e-12 76.3 170 38.8
MSTRG.6091 Avicennia marina HOM05D003638 ORTHO05D003202 3.4e-12 75.9 170 41.2
TPR.G25664 Trifolium pratense HOM05D003638 ORTHO05D003202 3.4e-12 75.9 171 37.4
arahy.Tifrunner.gnm1.ann1.8W4I3Q Arachis hypogaea HOM05D003638 ORTHO05D003202 4.4e-12 75.5 169 37.9
Phvul.009G209800 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 4.4e-12 75.5 172 37.8
Haze_19322 Corylus avellana HOM05D003638 ORTHO05D003202 1.7e-11 73.6 170 37.6
Lalb_Chr08g0233671 Lupinus albus HOM05D003638 ORTHO05D003202 1.7e-11 73.6 173 38.2
Manes.14G138300 Manihot esculenta HOM05D003638 ORTHO05D003202 1.7e-11 73.6 153 39.9
Nitab4.5_0005330g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.7e-11 73.6 175 35.4
Duzib187G0899 Durio zibethinus HOM05D003638 ORTHO05D003202 2.2e-11 73.2 167 38.3
Manes.14G138400 Manihot esculenta HOM05D003638 ORTHO05D003202 2.2e-11 73.2 172 37.8
Nitab4.5_0001751g0040 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.2e-11 73.2 172 34.3
Cfa020895 Carpinus fangiana HOM05D003638 ORTHO05D003202 3.7e-11 72.4 173 39.3
Sopen07g003220 Solanum pennellii HOM05D003638 ORTHO05D003202 3.7e-11 72.4 105 48.6
PGSC0003DMG402030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 3.7e-11 72.4 105 50.5
ECA236G1572 Erigeron canadensis HOM05D003638 ORTHO05D003202 4.9e-11 72.0 172 39.0
Aa31LG8G12110 Aethionema arabicum HOM05D003638 ORTHO05D003202 1.1e-10 70.9 105 49.5
Aqoxy7G03537 Aquilegia oxysepala HOM05D003638 ORTHO05D003202 1.1e-10 70.9 171 38.0
Lsat_1_v5_gn_8_63100 Lactuca sativa HOM05D003638 ORTHO05D003202 1.4e-10 70.5 168 39.9
Nitab4.5_0007535g0020 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.4e-10 70.5 103 46.6
Sopen06g024020 Solanum pennellii HOM05D003638 ORTHO05D003202 1.4e-10 70.5 105 46.7
Solyc07g007170.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 1.9e-10 70.1 105 46.7
HanXRQChr10g0315321 Helianthus annuus HOM05D003638 ORTHO05D003202 4.1e-10 68.9 171 36.8
Nitab4.5_0001021g0070 Nicotiana tabacum HOM05D003638 ORTHO05D003202 4.1e-10 68.9 105 45.7
PGR102G3190 Punica granatum HOM05D003638 ORTHO05D003202 1.6e-09 67.0 168 36.3
QL02p091214 Quercus lobata HOM05D003638 ORTHO05D003202 2.7e-09 66.2 172 37.2
Gorai.010G056400 Gossypium raimondii HOM05D003638 ORTHO05D003202 3.5e-09 65.9 155 37.4
Gohir.A06G050200 Gossypium hirsutum HOM05D003638 ORTHO05D003202 4.6e-09 65.5 150 39.3
Nitab4.5_0001021g0080 Nicotiana tabacum HOM05D003638 ORTHO05D003202 4.6e-09 65.5 170 35.3
A03p45490 Brassica napus HOM05D003638 ORTHO05D003202 7.8e-09 64.7 102 46.1
BraA03t13679Z Brassica rapa HOM05D003638 ORTHO05D003202 7.8e-09 64.7 102 46.1
Lalb_Chr08g0233781 Lupinus albus HOM05D003638 ORTHO05D003202 7.8e-09 64.7 106 46.2
CiPaw.15G182700 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.3e-08 63.9 169 34.3
HanXRQChr05g0137971 Helianthus annuus HOM05D003638 ORTHO05D003202 1.3e-08 63.9 174 36.8
BcaC01g03063 Brassica carinata HOM05D011508 ORTHO05D017548 2.3e-08 63.2 102 45.1
C03p56460 Brassica napus HOM05D003638 ORTHO05D003202 2.3e-08 63.2 102 45.1
BolC3t17933H Brassica oleracea HOM05D003638 ORTHO05D003202 2.3e-08 63.2 102 45.1
PSO017G4113 Papaver somniferum HOM05D003638 ORTHO05D003202 2.3e-08 63.2 188 34.6
vmacro21883 Vaccinium macrocarpon HOM05D003638 ORTHO05D003202 2.3e-08 63.2 91 39.6
BcaB08g34596 Brassica carinata HOM05D003638 ORTHO05D003202 5.1e-08 62.0 103 45.6
A03p45520 Brassica napus HOM05D003638 ORTHO05D003202 5.1e-08 62.0 102 45.1
BraA03t13684Z Brassica rapa HOM05D003638 ORTHO05D003202 5.1e-08 62.0 102 45.1
PSO170G3167 Papaver somniferum HOM05D003638 ORTHO05D003202 5.1e-08 62.0 189 33.9
MSTRG.26318 Avicennia marina HOM05D003638 ORTHO05D003202 6.6e-08 61.6 111 42.3
VMungo1309G1330 Vigna mungo HOM05D003638 ORTHO05D003202 6.6e-08 61.6 211 30.3
MSTRG.26319 Avicennia marina HOM05D003638 ORTHO05D003202 8.6e-08 61.2 175 33.7
ClCG06G012030 Citrullus lanatus HOM05D003638 ORTHO05D003202 8.6e-08 61.2 103 46.6
Gohir.D08G106900 Gossypium hirsutum HOM05D003638 ORTHO05D003202 4.3e-07 58.9 91 44.0
Gorai.004G114100 Gossypium raimondii HOM05D003638 ORTHO05D003202 4.3e-07 58.9 91 44.0
Psat1g023080 Pisum sativum HOM05D003638 ORTHO05D003202 4.3e-07 58.9 105 41.9
DCAR_014923 Daucus carota HOM05D003638 ORTHO05D003202 5.6e-07 58.5 102 47.1
HanXRQChr05g0137981 Helianthus annuus HOM05D003638 ORTHO05D003202 9.5e-07 57.8 104 44.2
ECA234G1438 Erigeron canadensis HOM05D003638 ORTHO05D003202 2.1e-06 56.6 176 35.8
SGA_v2.0_scaffold278G46736 Striga asiatica HOM05D003638 ORTHO05D003202 4.7e-06 55.5 172 30.8
BcaC01g03061 Brassica carinata HOM05D003638 ORTHO05D003202 8.1e-06 54.7 97 46.4
C03p56510 Brassica napus HOM05D003638 ORTHO05D003202 8.1e-06 54.7 97 46.4
BolC3t17937H Brassica oleracea HOM05D003638 ORTHO05D003202 8.1e-06 54.7 97 46.4


User provided reference genes

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