Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.4e-156 556.2 268 100.0
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 2.5e-110 402.5 279 68.8
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 2.1e-109 399.4 269 71.0
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 7.5e-107 391.0 280 68.2
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 7.5e-107 391.0 275 69.1
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 9.9e-107 390.6 275 67.6
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 3.7e-106 388.7 275 68.0
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 3.7e-106 388.7 265 67.9
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 4.9e-106 388.3 265 68.3
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 3.2e-105 385.6 282 67.7
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 3.2e-105 385.6 271 67.5
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 9.2e-105 384.0 279 65.2
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 9.2e-105 384.0 270 66.7
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 1.6e-104 383.3 284 62.0
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 3.5e-104 382.1 270 66.3
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 4.6e-104 381.7 283 64.0
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 6.0e-104 381.3 281 65.8
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.0e-103 380.6 286 63.6
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 1.3e-103 380.2 280 65.4
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 2.3e-103 379.4 284 63.4
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 2.3e-103 379.4 284 63.4
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 6.6e-103 377.9 281 64.8
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 8.6e-103 377.5 265 68.3
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 1.9e-102 376.3 282 64.9
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.6e-101 373.2 307 61.9
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 2.8e-101 372.5 277 66.8
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 3.6e-101 372.1 286 64.0
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 1.1e-100 370.5 281 64.1
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 1.4e-100 370.2 260 66.9
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 1.8e-100 369.8 275 65.1
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 8.9e-100 367.5 269 66.2
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 8.9e-100 367.5 274 65.0
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.5e-99 366.7 313 59.1
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.5e-99 366.7 313 59.1
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.5e-99 366.7 260 66.2
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 1.7e-98 363.2 279 61.6
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 2.2e-98 362.8 274 63.9
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 2.2e-98 362.8 274 63.9
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 4.9e-98 361.7 277 62.1
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 8.4e-98 360.9 281 62.6
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 3.2e-97 359.0 277 61.0
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 2.1e-96 356.3 281 62.6
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 2.7e-96 355.9 280 61.1
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 4.6e-96 355.1 275 62.9
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 4.6e-96 355.1 279 61.3
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 6.0e-96 354.8 282 59.6
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 6.0e-96 354.8 277 62.5
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 7.8e-96 354.4 270 64.8
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 7.8e-96 354.4 272 61.8
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.7e-95 353.2 263 64.3
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 2.3e-95 352.8 273 64.5
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 3.9e-95 352.1 281 60.9
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 2.5e-94 349.4 276 62.3
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 4.3e-94 348.6 271 61.6
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 5.6e-94 348.2 296 59.5
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.1e-93 346.3 227 70.9
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 2.8e-93 345.9 280 59.6
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.0e-92 342.0 263 63.1
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 4.0e-92 342.0 278 61.2
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 9.0e-92 340.9 238 67.6
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.3e-90 337.0 256 63.3
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.7e-90 336.7 271 62.0
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 1.7e-90 336.7 280 58.9
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 3.8e-90 335.5 311 55.9
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 3.8e-90 335.5 311 55.9
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 6.4e-90 334.7 277 60.6
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.9e-89 333.2 234 69.2
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 5.4e-89 331.6 273 61.5
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 7.1e-89 331.3 283 57.2
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.6e-88 330.1 277 59.6
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 2.1e-88 329.7 266 60.2
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.1e-88 329.7 238 64.7
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 6.0e-88 328.2 272 58.1
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 3.0e-87 325.9 331 51.4
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 1.5e-86 323.6 285 57.5
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 2.8e-85 319.3 275 57.8
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 2.8e-85 319.3 272 58.5
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 3.6e-85 318.9 280 57.1
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 6.2e-85 318.2 277 53.8
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 1.2e-83 313.9 263 57.0
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 1.5e-83 313.5 285 55.8
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 2.0e-83 313.2 218 68.3
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 8.4e-82 307.8 283 55.8
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 1.1e-81 307.4 283 55.8
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 1.1e-81 307.4 233 63.5
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 1.1e-81 307.4 232 63.8
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 4.2e-81 305.4 278 57.2
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 2.1e-80 303.1 213 67.6
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 7.9e-80 301.2 232 63.8
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.8e-79 300.1 216 66.7
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 3.0e-79 299.3 271 56.5
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 3.0e-79 299.3 226 65.5
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 2.5e-78 296.2 214 66.8
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 6.9e-76 288.1 286 52.8
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 2.0e-75 286.6 239 56.9
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 1.4e-73 280.4 200 65.5
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.3e-71 273.1 160 78.8
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 4.3e-70 268.9 221 61.1
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 2.4e-68 263.1 156 75.0
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 7.6e-67 258.1 274 48.9
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.3e-66 257.3 267 49.1
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 2.2e-66 256.5 226 57.1
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 2.2e-66 256.5 294 45.9
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 7.1e-65 251.5 150 75.3
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 1.6e-64 250.4 267 48.7
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.7e-61 239.2 261 49.0
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.7e-58 230.3 286 43.4
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.4e-57 227.3 289 42.9
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 5.5e-57 225.3 178 62.9
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 7.9e-56 221.5 159 63.5
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 2.3e-55 219.9 267 47.9
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.9e-55 219.2 274 46.7
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 6.7e-47 191.8 180 52.8
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 7.4e-46 188.3 245 44.1
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 9.7e-46 188.0 144 59.0
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 3.7e-45 186.0 218 48.6
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 1.8e-39 167.2 122 64.8
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 3.0e-39 166.4 101 73.3
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 1.5e-38 164.1 97 76.3
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 4.4e-38 162.5 139 59.0
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 2.7e-32 143.3 95 68.4
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 2.0e-30 137.1 161 46.0
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.5e-27 126.3 90 68.9
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 4.5e-27 125.9 88 67.0
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.0e-19 100.5 109 52.3
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.4e-15 87.8 54 72.2
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.4e-14 83.2 68 50.0
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 3.7e-13 79.7 54 64.8
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 1.3e-10 71.2 45 64.4
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 2.9e-10 70.1 87 43.7


User provided reference genes

Program Settings