Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0010780 Simmondsia chinensis HOM05D002819 ORTHO05D003207 9.3e-75 283.5 147 100.0
Atru.chr12.2014 Acer truncatum HOM05D002819 ORTHO05D003207 4.1e-14 82.0 197 35.0
Cc02_g00430 Coffea canephora HOM05D002819 ORTHO05D003207 5.4e-14 81.6 191 37.2
SGA_v2.0_scaffold50G18432 Striga asiatica HOM05D002819 ORTHO05D003207 1.6e-13 80.1 193 34.7
QL09p025989 Quercus lobata HOM05D002819 ORTHO05D003207 2.0e-13 79.7 195 35.4
FvH4_7g33561 Fragaria vesca HOM05D002819 ORTHO05D003207 2.7e-13 79.3 190 35.8
Prupe.2G323600 Prunus persica HOM05D002819 ORTHO05D003207 2.7e-13 79.3 195 34.9
VMungo1127G1411 Vigna mungo HOM05D002819 ORTHO05D003207 2.7e-13 79.3 189 36.5
CANSAT21G1003 Cannabis sativa HOM05D002819 ORTHO05D003207 7.8e-13 77.8 198 34.8
Peaxi162Scf00133g00916 Petunia axillaris HOM05D002819 ORTHO05D003207 1.3e-12 77.0 191 35.6
Peaxi162Scf01650g00038 Petunia axillaris HOM05D002819 ORTHO05D003207 1.3e-12 77.0 190 34.2
Hma1.2p1_0758F.1_g213570 Hydrangea macrophylla HOM05D002819 ORTHO05D003207 1.7e-12 76.6 194 34.0
TAR374G1715 Trochodendron aralioides HOM05D002819 ORTHO05D003207 1.7e-12 76.6 195 32.8
TAR629G2358 Trochodendron aralioides HOM05D002819 ORTHO05D003207 1.7e-12 76.6 191 34.6
Haze_00589 Corylus avellana HOM05D002819 ORTHO05D003207 2.3e-12 76.3 196 35.2
Nitab4.5_0000021g0320 Nicotiana tabacum HOM05D002819 ORTHO05D003207 2.3e-12 76.3 191 34.0
Phvul.011G021600 Phaseolus vulgaris HOM05D002819 ORTHO05D003207 2.3e-12 76.3 189 35.4
CDE01G0571 Ceratophyllum demersum HOM05D002819 ORTHO05D003207 2.9e-12 75.9 156 39.1
Gohir.D03G049900 Gossypium hirsutum HOM05D002819 ORTHO05D003207 2.9e-12 75.9 192 33.9
Gorai.003G051400 Gossypium raimondii HOM05D002819 ORTHO05D003207 2.9e-12 75.9 192 33.9
MD07G1305500 Malus domestica HOM05D002819 ORTHO05D003207 2.9e-12 75.9 190 35.3
GSVIVG01024453001 Vitis vinifera HOM05D002819 ORTHO05D003207 2.9e-12 75.9 198 33.3
CAN.G303.71 Capsicum annuum HOM05D002819 ORTHO05D003207 3.8e-12 75.5 191 35.1
Migut.F00954 Erythranthe guttata HOM05D002819 ORTHO05D003207 3.8e-12 75.5 194 34.5
Gohir.A02G139200 Gossypium hirsutum HOM05D002819 ORTHO05D003207 3.8e-12 75.5 192 34.4
Potri.019G048300 Populus trichocarpa HOM05D002819 ORTHO05D003207 3.8e-12 75.5 194 33.0
Sabra13G0071600 Salix brachista HOM05D002819 ORTHO05D003207 3.8e-12 75.5 195 35.4
CiPaw.05G236700 Carya illinoinensis HOM05D002819 ORTHO05D003207 5.0e-12 75.1 192 33.3
Glyma.11G092900 Glycine max HOM05D002819 ORTHO05D003207 6.6e-12 74.7 189 34.9
CSS0046349 Camellia sinensis var. sinensis HOM05D002819 ORTHO05D003207 8.6e-12 74.3 198 33.8
Glyma.12G019200 Glycine max HOM05D002819 ORTHO05D003207 8.6e-12 74.3 189 34.4
Os06g0114700 Oryza sativa ssp. japonica HOM05D002819 ORTHO05D003207 8.6e-12 74.3 190 35.3
PGR042G3857 Punica granatum HOM05D002819 ORTHO05D003207 8.6e-12 74.3 192 33.3
Eucgr.A02959 Eucalyptus grandis HOM05D002819 ORTHO05D003207 1.1e-11 73.9 196 32.1
Lj3g0016389 Lotus japonicus HOM05D002819 ORTHO05D003207 1.1e-11 73.9 191 32.5
Manes.08G164700 Manihot esculenta HOM05D002819 ORTHO05D003207 1.1e-11 73.9 197 34.5
Actinidia08734 Actinidia chinensis HOM05D002819 ORTHO05D003207 1.5e-11 73.6 196 35.2
Psat7g171160 Pisum sativum HOM05D002819 ORTHO05D003207 1.5e-11 73.6 191 34.6
unitig_578.g16665 Utricularia gibba HOM05D002819 ORTHO05D003207 1.9e-11 73.2 193 32.6
DCAR_010549 Daucus carota HOM05D002819 ORTHO05D003207 2.5e-11 72.8 191 33.5
Nn1g02013 Nelumbo nucifera HOM05D002819 ORTHO05D003207 3.3e-11 72.4 190 34.7
Nn3g19275 Nelumbo nucifera HOM05D002819 ORTHO05D003207 3.3e-11 72.4 185 37.3
Duzib128G0634 Durio zibethinus HOM05D002819 ORTHO05D003207 4.3e-11 72.0 196 33.2
SalBow4G1237 Salvia bowleyana HOM05D002819 ORTHO05D003207 4.3e-11 72.0 194 35.1
RcHm_v2.0_Chr1g0383821 Rosa chinensis HOM05D002819 ORTHO05D003207 5.6e-11 71.6 189 33.3
Duzib177G0623 Durio zibethinus HOM05D002819 ORTHO05D003207 7.3e-11 71.2 194 33.0
Zm00001eb378900 Zea mays HOM05D002819 ORTHO05D003207 7.3e-11 71.2 189 31.7
Actinidia28266 Actinidia chinensis HOM05D002819 ORTHO05D003207 9.5e-11 70.9 191 33.5
Dinv29175 Davidia involucrata HOM05D002819 ORTHO05D003207 1.2e-10 70.5 189 33.9
Eucgr.K00096 Eucalyptus grandis HOM05D002819 ORTHO05D003207 1.6e-10 70.1 197 32.0
Thecc.05G207400 Theobroma cacao HOM05D002819 ORTHO05D003207 1.6e-10 70.1 194 32.0
MD01G1233300 Malus domestica HOM05D002819 ORTHO05D003207 2.1e-10 69.7 193 33.7
Duzib106G1872 Durio zibethinus HOM05D002819 ORTHO05D003207 2.8e-10 69.3 194 33.0
Sopen03g027610 Solanum pennellii HOM05D002819 ORTHO05D003207 2.8e-10 69.3 191 33.0
Medtr4g077250 Medicago truncatula HOM05D002819 ORTHO05D003207 3.6e-10 68.9 193 33.7
Dinv17268 Davidia involucrata HOM05D002819 ORTHO05D003207 4.7e-10 68.6 105 41.0
Solyc03g096860.3 Solanum lycopersicum HOM05D002819 ORTHO05D003207 6.1e-10 68.2 188 33.0
PGSC0003DMG400000568 Solanum tuberosum HOM05D002819 ORTHO05D003207 6.1e-10 68.2 188 33.5
DCAR_014571 Daucus carota HOM05D002819 ORTHO05D003207 1.0e-09 67.4 193 32.6
Ah.13g071280 Amaranthus hybridus HOM05D002819 ORTHO05D003207 1.4e-09 67.0 174 33.9
ECA233G1225 Erigeron canadensis HOM05D002819 ORTHO05D003207 1.4e-09 67.0 188 27.7
Sc19g0000260 Simmondsia chinensis HOM05D002819 ORTHO05D003207 1.4e-09 67.0 200 30.0
TPR.G29504 Trifolium pratense HOM05D002819 ORTHO05D003207 1.4e-09 67.0 191 33.0
Rhsim03G0220000 Rhododendron simsii HOM05D002819 ORTHO05D003207 1.8e-09 66.6 195 32.3
FAN03G3363 Fragaria x ananassa HOM05D002819 ORTHO05D003207 3.1e-09 65.9 218 30.7
Actinidia18697 Actinidia chinensis HOM05D002819 ORTHO05D003207 4.0e-09 65.5 196 34.2
MBI04_g21136_MAGBIO Magnolia biondii HOM05D002819 ORTHO05D003207 4.0e-09 65.5 189 31.7
Sabra19G0057500 Salix brachista HOM05D002819 ORTHO05D003207 4.0e-09 65.5 105 38.1
Sp6g27020 Schrenkiella parvula HOM05D002819 ORTHO05D003207 4.0e-09 65.5 191 31.4
EL10Ac3g05101 Beta vulgaris HOM05D002819 ORTHO05D003207 5.2e-09 65.1 190 31.1
Eucgr.G01794 Eucalyptus grandis HOM05D002819 ORTHO05D003207 5.2e-09 65.1 195 32.3
Lj1A1032G30 Lonicera japonica HOM05D002819 ORTHO05D003207 5.2e-09 65.1 108 38.0
THA.LOC104820872 Tarenaya hassleriana HOM05D002819 ORTHO05D003207 5.2e-09 65.1 190 32.1
arahy.Tifrunner.gnm1.ann1.QIP5TL Arachis hypogaea HOM05D002819 ORTHO05D003207 6.8e-09 64.7 193 31.1
arahy.Tifrunner.gnm1.ann1.QNZF80 Arachis hypogaea HOM05D002819 ORTHO05D003207 6.8e-09 64.7 193 32.6
arahy.Tifrunner.gnm1.ann1.VUM9KL Arachis hypogaea HOM05D002819 ORTHO05D003207 6.8e-09 64.7 193 31.6
Cpa.g.sc39.54 Carica papaya HOM05D002819 ORTHO05D003207 6.8e-09 64.7 90 43.3
Rhsim09G0212000 Rhododendron simsii HOM05D002819 ORTHO05D003207 6.8e-09 64.7 94 42.6
Aqoxy3G02055 Aquilegia oxysepala HOM05D002819 ORTHO05D003207 2.0e-08 63.2 191 31.4
Eucgr.K00098 Eucalyptus grandis HOM05D002819 ORTHO05D003207 2.0e-08 63.2 185 33.5
Gohir.D08G243901 Gossypium hirsutum HOM05D002819 ORTHO05D003207 2.0e-08 63.2 165 30.3
Gorai.004G259800 Gossypium raimondii HOM05D002819 ORTHO05D003207 2.0e-08 63.2 165 30.3
HanXRQChr10g0304371 Helianthus annuus HOM05D002819 ORTHO05D003207 2.0e-08 63.2 186 27.4
Hund21088 Selenicereus undatus HOM05D002819 ORTHO05D003207 2.6e-08 62.8 190 30.0
AUR62005916 Chenopodium quinoa HOM05D002819 ORTHO05D003207 3.4e-08 62.4 114 37.7
AUR62028148 Chenopodium quinoa HOM05D002819 ORTHO05D003207 3.4e-08 62.4 185 30.8
Eucgr.L02108 Eucalyptus grandis HOM05D002819 ORTHO05D003207 3.4e-08 62.4 185 32.4
Lj3A890T57 Lonicera japonica HOM05D002819 ORTHO05D003207 3.4e-08 62.4 194 30.9
Rhsim03G0220200 Rhododendron simsii HOM05D002819 ORTHO05D003207 4.4e-08 62.0 198 31.3
TWI34G1962 Tripterygium wilfordii HOM05D002819 ORTHO05D003207 4.4e-08 62.0 196 31.6
vmacro10181 Vaccinium macrocarpon HOM05D002819 ORTHO05D003207 4.4e-08 62.0 207 30.4
COL.COLO4_06390 Corchorus olitorius HOM05D002819 ORTHO05D003207 5.8e-08 61.6 92 43.5
CsaV3_5G005270 Cucumis sativus L. HOM05D002819 ORTHO05D003207 5.8e-08 61.6 195 31.3
QL09p025978 Quercus lobata HOM05D002819 ORTHO05D003207 5.8e-08 61.6 187 32.1
ClCG01G005010 Citrullus lanatus HOM05D002819 ORTHO05D003207 7.5e-08 61.2 195 31.3
SEGI_10725 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 7.5e-08 61.2 188 27.7
Nitab4.5_0005081g0090 Nicotiana tabacum HOM05D002819 ORTHO05D003207 9.8e-08 60.8 143 35.0
SalBow2G3364 Salvia bowleyana HOM05D002819 ORTHO05D003207 9.8e-08 60.8 82 42.7
ClCG07G017290 Citrullus lanatus HOM05D002819 ORTHO05D003207 1.3e-07 60.5 180 32.8
HanXRQChr07g0206601 Helianthus annuus HOM05D002819 ORTHO05D003207 1.3e-07 60.5 97 39.2
Lsat_1_v5_gn_6_10480 Lactuca sativa HOM05D002819 ORTHO05D003207 1.3e-07 60.5 117 34.2
vmacro06494 Vaccinium macrocarpon HOM05D002819 ORTHO05D003207 1.7e-07 60.1 193 29.0
Ca_04933_v3 Cicer arietinum L. HOM05D002819 ORTHO05D003207 2.9e-07 59.3 210 29.5
Lalb_Chr19g0139871 Lupinus albus HOM05D002819 ORTHO05D003207 3.7e-07 58.9 191 29.3
CSS0022427 Camellia sinensis var. sinensis HOM05D002819 ORTHO05D003207 4.9e-07 58.5 83 39.8
MELO3C005433.2 Cucumis melo HOM05D002819 ORTHO05D003207 4.9e-07 58.5 195 30.8
Lsat_1_v5_gn_6_10560 Lactuca sativa HOM05D002819 ORTHO05D003207 4.9e-07 58.5 125 30.4
FAN10G2719 Fragaria x ananassa HOM05D000526 ORTHO05D000956 6.4e-07 58.2 151 35.1
Gohir.A08G223432 Gossypium hirsutum HOM05D002819 ORTHO05D003207 6.4e-07 58.2 156 29.5
SEGI_36138 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 1.1e-06 57.4 188 26.6
DCAR_020399 Daucus carota HOM05D002819 ORTHO05D003207 1.4e-06 57.0 189 29.6
Gorai.004G260000 Gossypium raimondii HOM05D002819 ORTHO05D003207 1.4e-06 57.0 205 29.8
vmacro06495 Vaccinium macrocarpon HOM05D002819 ORTHO05D003207 1.4e-06 57.0 114 36.8
BolC2t06795H Brassica oleracea HOM05D000498 ORTHO05D000354 1.9e-06 56.6 188 28.2
DCAR_004230 Daucus carota HOM05D000083 ORTHO05D003582 1.9e-06 56.6 160 31.2
BcaNung00421 Brassica carinata HOM05D002819 ORTHO05D003207 2.4e-06 56.2 191 29.8
DCAR_004229 Daucus carota HOM05D002819 ORTHO05D003207 2.4e-06 56.2 160 29.4
FAN01G0524 Fragaria x ananassa HOM05D000526 ORTHO05D000956 2.4e-06 56.2 153 36.6
HPP92_022723 Vanilla planifolia HOM05D002819 ORTHO05D003207 2.4e-06 56.2 98 36.7
AUR62000882 Chenopodium quinoa HOM05D002819 ORTHO05D003207 3.2e-06 55.8 178 32.0
Thhalv10014664m.g Eutrema salsugineum HOM05D002819 ORTHO05D003207 3.2e-06 55.8 190 27.4
MD01G1233400 Malus domestica HOM05D002819 ORTHO05D003207 3.2e-06 55.8 203 28.6
FAN10G1049 Fragaria x ananassa HOM05D000526 ORTHO05D000956 4.1e-06 55.5 151 34.4
EL10Ac4g09322 Beta vulgaris HOM05D002819 ORTHO05D003207 5.4e-06 55.1 161 32.9
C02p08840 Brassica napus HOM05D000498 ORTHO05D003207 5.4e-06 55.1 190 28.4
C02p08860 Brassica napus HOM05D000498 ORTHO05D003207 5.4e-06 55.1 190 28.4
ECA233G3407 Erigeron canadensis HOM05D002819 ORTHO05D003207 5.4e-06 55.1 179 30.7
HanXRQChr07g0186991 Helianthus annuus HOM05D002819 ORTHO05D003207 5.4e-06 55.1 184 26.6
AL6G28260 Arabidopsis lyrata HOM05D002819 ORTHO05D003207 7.0e-06 54.7 194 32.5
Cfa015897 Carpinus fangiana HOM05D002819 ORTHO05D003207 9.2e-06 54.3 155 32.9
Gohir.A08G223480 Gossypium hirsutum HOM05D002819 ORTHO05D003207 9.2e-06 54.3 209 28.7
Lsat_1_v5_gn_6_10520 Lactuca sativa HOM05D002819 ORTHO05D003207 9.2e-06 54.3 163 29.4


User provided reference genes

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