Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 0.0e+00 2194.9 1091 100.0
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 2.6e-81 308.1 1229 27.3
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 5.8e-81 307.0 919 30.3
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 8.7e-77 293.1 1219 27.0
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.1e-76 292.7 1105 28.1
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.3e-76 291.2 1166 27.4
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 3.4e-73 281.2 1142 27.2
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 4.5e-73 280.8 1286 26.9
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.7e-72 278.9 1285 26.8
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 5.5e-71 273.9 1081 27.9
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 9.0e-66 256.5 1132 26.9
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 2.9e-64 251.5 1249 26.5
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 1.4e-63 249.2 1204 26.8
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 3.0e-61 241.5 1274 26.1
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.1e-61 240.7 1220 26.4
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.5e-60 238.4 945 29.5
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 7.7e-57 226.9 1241 27.1
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.2e-55 221.1 1239 25.6
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 5.5e-55 220.7 1158 25.0
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 1.0e-53 216.5 1240 26.0
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.3e-53 215.3 1139 24.9
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 4.4e-52 211.1 968 27.1
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 7.4e-52 210.3 1250 24.6
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.4e-50 206.1 954 26.8
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.1e-50 204.5 1243 24.4
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.6e-49 201.8 1243 26.7
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.6e-49 201.8 1256 24.5
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 2.6e-49 201.8 1117 27.0
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 7.2e-47 193.7 1098 26.1
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.1e-46 192.2 1049 25.0
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.0e-45 189.9 1084 24.0
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 3.0e-45 188.3 1080 25.3
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 5.7e-44 184.1 1080 24.7
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.7e-43 181.4 936 25.4
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 6.3e-43 180.6 950 24.6
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.2e-41 176.4 1044 25.1
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 5.9e-41 174.1 1240 24.4
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 5.0e-40 171.0 1220 24.3
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 3.2e-39 168.3 1051 26.5
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 3.0e-37 161.8 930 26.2
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 2.6e-36 158.7 1122 24.7
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 9.1e-34 150.2 1161 24.4
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 9.1e-34 150.2 1148 24.2
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 1.6e-33 149.4 959 25.3
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 2.2e-32 145.6 1187 23.4
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 5.0e-32 144.4 859 24.0
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.2e-31 141.7 764 24.9
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.6e-30 139.4 995 23.8
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.3e-29 135.6 995 23.7
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 4.0e-29 134.8 1048 23.8
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 6.8e-29 134.0 1076 21.9
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 4.4e-28 131.3 1099 23.5
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 2.2e-27 129.0 1033 22.6
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 8.3e-27 127.1 840 24.5
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 3.1e-26 125.2 976 23.4
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 2.7e-25 122.1 1041 22.3
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 2.7e-25 122.1 1201 22.6
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.9e-24 118.6 1160 22.8
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 2.5e-23 115.5 1120 24.1
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 3.3e-23 115.2 1184 24.0
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 3.3e-23 115.2 927 23.4
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 3.3e-23 115.2 765 23.1
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 3.3e-23 115.2 967 24.0
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 4.2e-23 114.8 969 22.9
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 5.5e-23 114.4 515 25.4
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 7.2e-23 114.0 747 24.2
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 9.5e-23 113.6 888 23.2
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.2e-22 113.2 773 23.0
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 3.6e-22 111.7 975 22.6
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 3.6e-22 111.7 751 24.8
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 1.4e-21 109.8 828 23.6
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 1.4e-21 109.8 483 24.4
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.0e-21 108.2 526 27.2
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 5.2e-21 107.8 1186 22.3
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 5.2e-21 107.8 723 23.4
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 2.0e-20 105.9 967 23.0
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.0e-20 105.9 994 22.8
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 2.0e-20 105.9 1059 24.5
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 1.3e-19 103.2 497 27.4
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.2e-19 102.4 985 22.7
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.9e-19 102.1 538 26.0
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 4.9e-19 101.3 1073 21.8
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 6.3e-19 100.9 1245 22.0
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 6.3e-19 100.9 512 26.4
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 1.1e-18 100.1 863 24.2
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 4.1e-18 98.2 1067 24.3
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.6e-17 96.3 637 26.1
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 3.9e-16 91.7 1082 21.3
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.5e-15 89.7 243 31.3
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 1.9e-15 89.4 733 22.1
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.5e-15 89.0 369 27.9
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 7.3e-15 87.4 908 22.6
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 4.7e-14 84.7 515 26.0
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 5.2e-13 81.3 534 23.8
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 6.8e-13 80.9 1076 19.7
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 6.8e-13 80.9 1076 19.7
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 8.3e-11 73.9 302 26.2
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.4e-10 73.2 959 22.5
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 5.4e-10 71.2 87 47.1
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 5.4e-10 71.2 261 29.5
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 5.4e-10 71.2 249 28.1
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 7.0e-10 70.9 180 32.2
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 7.0e-10 70.9 180 32.2
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 7.0e-10 70.9 180 32.2
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 9.2e-10 70.5 918 22.9
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 1.2e-09 70.1 333 27.0
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 1.6e-09 69.7 212 28.3
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.6e-09 69.7 524 25.2
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 4.6e-09 68.2 244 26.6
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 7.8e-09 67.4 593 22.3
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 7.8e-09 67.4 202 29.2
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 7.8e-09 67.4 296 25.7
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 1.3e-08 66.6 533 23.3
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 1.3e-08 66.6 533 23.3
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 1.3e-08 66.6 92 39.1
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.3e-08 65.9 824 22.8
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 3.0e-08 65.5 276 27.2
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 3.0e-08 65.5 276 27.2
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 3.0e-08 65.5 367 25.6
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 3.9e-08 65.1 416 24.0
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 6.6e-08 64.3 314 25.5
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 1.9e-07 62.8 396 25.5
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 9.5e-07 60.5 568 22.7
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 9.5e-07 60.5 281 28.5
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 1.6e-06 59.7 245 23.7
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 1.6e-06 59.7 176 32.4
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 2.8e-06 58.9 246 27.6


User provided reference genes

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