Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 1.6e-94 349.4 170 100.0
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 1.7e-59 233.0 127 89.8
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 7.0e-58 227.6 129 87.6
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.6e-57 226.5 127 87.4
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.0e-56 223.8 127 86.6
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.7e-56 223.0 126 84.9
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 2.3e-56 222.6 129 83.7
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 2.9e-56 222.2 127 85.0
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.9e-56 222.2 127 86.6
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 2.9e-56 222.2 126 84.9
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.8e-56 221.9 127 86.6
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 8.6e-56 220.7 130 81.5
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 8.6e-56 220.7 127 85.0
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 8.6e-56 220.7 127 85.0
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 8.6e-56 220.7 125 86.4
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 1.1e-55 220.3 129 85.3
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.9e-55 219.5 126 85.7
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 3.3e-55 218.8 127 84.3
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 4.3e-55 218.4 126 84.1
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 5.6e-55 218.0 129 81.4
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 7.3e-55 217.6 127 83.5
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 1.6e-54 216.5 129 81.4
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 3.6e-54 215.3 133 78.2
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 1.8e-53 213.0 127 83.5
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 2.3e-53 212.6 127 81.1
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 3.0e-53 212.2 128 81.2
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 3.0e-53 212.2 129 79.8
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 3.0e-53 212.2 130 79.2
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 4.0e-53 211.8 131 78.6
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 4.0e-53 211.8 131 80.2
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 5.2e-53 211.5 129 79.8
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 5.2e-53 211.5 127 80.3
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 6.8e-53 211.1 129 79.1
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 6.8e-53 211.1 129 79.1
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 8.9e-53 210.7 129 79.8
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 8.9e-53 210.7 129 79.1
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 8.9e-53 210.7 124 81.5
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 8.9e-53 210.7 129 78.3
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.2e-52 210.3 130 79.2
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.2e-52 210.3 125 81.6
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.5e-52 209.9 127 78.7
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 2.0e-52 209.5 127 80.3
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 2.6e-52 209.1 129 79.1
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 3.4e-52 208.8 130 79.2
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 3.4e-52 208.8 127 78.7
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.4e-52 208.8 129 78.3
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 3.4e-52 208.8 129 78.3
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 3.4e-52 208.8 129 79.1
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 4.4e-52 208.4 124 79.8
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 4.4e-52 208.4 126 80.2
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 4.4e-52 208.4 127 81.1
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 5.7e-52 208.0 127 78.0
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 7.5e-52 207.6 127 81.9
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 7.5e-52 207.6 127 81.9
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 7.5e-52 207.6 127 80.3
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 7.5e-52 207.6 129 77.5
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 9.8e-52 207.2 127 79.5
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 9.8e-52 207.2 127 79.5
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 9.8e-52 207.2 127 78.0
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 1.3e-51 206.8 125 81.6
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.3e-51 206.8 127 78.7
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.7e-51 206.5 131 75.6
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.2e-51 206.1 127 81.1
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.2e-51 206.1 127 81.1
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 2.2e-51 206.1 131 76.3
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.9e-51 204.9 127 81.1
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 4.9e-51 204.9 127 78.0
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 6.4e-51 204.5 131 77.1
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 8.3e-51 204.1 126 79.4
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 8.3e-51 204.1 125 77.6
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.1e-50 203.8 131 76.3
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.1e-50 203.8 129 77.5
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.1e-50 203.8 129 76.0
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.8e-50 203.0 127 80.3
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.8e-50 203.0 127 77.2
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 1.8e-50 203.0 132 74.2
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 2.4e-50 202.6 128 77.3
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 2.4e-50 202.6 128 77.3
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 2.4e-50 202.6 128 77.3
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 2.4e-50 202.6 128 77.3
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 2.4e-50 202.6 128 77.3
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 3.2e-50 202.2 128 77.3
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 3.2e-50 202.2 132 75.0
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 3.2e-50 202.2 127 78.0
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 3.2e-50 202.2 125 76.8
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 4.1e-50 201.8 128 77.3
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 5.4e-50 201.4 128 76.6
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 5.4e-50 201.4 128 76.6
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 7.0e-50 201.1 118 83.1
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 9.2e-50 200.7 118 83.1
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.2e-49 200.3 127 79.5
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.6e-49 199.9 128 76.6
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.6e-49 199.9 131 74.0
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.6e-49 199.9 130 76.2
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 2.0e-49 199.5 127 76.4
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 3.5e-49 198.7 130 75.4
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.5e-49 198.7 126 74.6
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 4.6e-49 198.4 127 76.4
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 4.6e-49 198.4 128 78.9
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 1.0e-48 197.2 131 74.0
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.0e-48 197.2 133 72.2
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.3e-48 196.8 128 74.2
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 1.7e-48 196.4 129 75.2
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.0e-48 195.7 131 73.3
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 8.6e-48 194.1 106 88.7
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.9e-47 193.0 128 75.8
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 2.5e-47 192.6 129 72.9
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 2.5e-47 192.6 129 71.3
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 4.7e-46 188.3 110 77.3
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.4e-45 186.8 127 77.2
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 1.4e-45 186.8 139 65.5
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.3e-43 180.3 174 55.7
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 3.7e-43 178.7 127 72.4
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.9e-42 176.4 112 76.8
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 2.8e-38 162.5 111 73.9
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 1.1e-34 150.6 89 83.1
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.1e-33 146.4 82 85.4
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.1e-31 140.6 82 79.3
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 1.1e-29 134.0 79 84.8
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.9e-26 123.2 103 60.2
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.9e-26 123.2 81 74.1
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 3.5e-25 119.0 88 63.6
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 3.9e-24 115.5 89 65.2
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 8.1e-22 107.8 61 86.9
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 8.1e-22 107.8 67 77.6
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 2.4e-21 106.3 129 50.4
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.2e-20 104.0 67 76.1
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.8e-19 99.0 77 71.4
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 2.1e-17 93.2 87 49.4
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 9.6e-15 84.3 56 76.8
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 6.2e-14 81.6 81 51.9
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 2.6e-12 76.3 116 46.6
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 1.9e-07 60.1 59 42.4
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.9e-07 60.1 40 65.0
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.3e-06 57.4 36 75.0
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.3e-06 57.4 50 64.0
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 8.1e-06 54.7 50 62.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 8.1e-06 54.7 50 64.0


User provided reference genes

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