Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.9e-35 151.0 80 100.0
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.9e-21 105.5 80 75.0
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 4.2e-21 104.4 81 72.8
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.2e-20 102.8 78 70.5
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 6.7e-19 97.1 79 69.6
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.1e-18 96.3 78 66.7
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.5e-18 95.9 78 66.7
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.5e-18 95.9 78 66.7
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.7e-17 91.3 78 64.1
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 4.8e-17 90.9 79 65.8
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.3e-17 90.5 79 65.8
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.8e-16 89.0 78 64.1
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 2.4e-16 88.6 80 63.8
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.4e-16 88.6 77 67.5
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 5.3e-16 87.4 80 65.0
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 5.3e-16 87.4 79 65.8
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 7.0e-16 87.0 80 62.5
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 7.0e-16 87.0 78 65.4
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 9.1e-16 86.7 80 61.2
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 9.1e-16 86.7 78 65.4
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.2e-15 86.3 83 63.9
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.2e-15 86.3 83 63.9
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.6e-15 85.9 78 62.8
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 2.0e-15 85.5 78 61.5
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.0e-15 85.5 83 63.9
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.6e-15 85.1 78 62.8
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 2.6e-15 85.1 78 62.8
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 2.6e-15 85.1 81 59.3
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 3.5e-15 84.7 78 64.1
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.5e-15 84.7 75 62.7
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 4.5e-15 84.3 78 62.8
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 4.5e-15 84.3 78 61.5
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 4.5e-15 84.3 60 75.0
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 4.5e-15 84.3 80 61.2
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 4.5e-15 84.3 80 61.2
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 5.9e-15 84.0 78 61.5
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 7.7e-15 83.6 79 60.8
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.3e-14 82.8 78 61.5
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.7e-14 82.4 78 62.8
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 2.2e-14 82.0 78 57.7
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 5.0e-14 80.9 80 58.8
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 1.1e-13 79.7 78 55.1
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.9e-13 79.0 78 62.8
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.9e-13 79.0 78 57.7
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.9e-13 79.0 77 59.7
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.9e-13 79.0 77 63.6
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 2.5e-13 78.6 78 59.0
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 3.2e-13 78.2 76 57.9
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 5.5e-13 77.4 77 58.4
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 5.5e-13 77.4 57 71.9
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 7.2e-13 77.0 80 57.5
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 7.2e-13 77.0 78 56.4
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 9.4e-13 76.6 78 62.8
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 9.4e-13 76.6 77 57.1
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.2e-12 76.3 77 62.3
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.2e-12 76.3 75 58.7
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.2e-12 76.3 75 58.7
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.1e-12 75.5 79 55.7
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.6e-12 74.7 78 60.3
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.6e-12 74.7 78 61.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.6e-12 74.7 78 61.5
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.7e-12 74.3 78 57.7
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 4.7e-12 74.3 76 57.9
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 4.7e-12 74.3 79 55.7
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 4.7e-12 74.3 83 57.8
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.7e-12 74.3 91 50.5
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 8.0e-12 73.6 79 57.0
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 1.0e-11 73.2 77 57.1
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 1.4e-11 72.8 77 57.1
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.4e-11 72.8 78 59.0
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.8e-11 72.4 78 60.3
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 1.8e-11 72.4 78 56.4
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.3e-11 72.0 79 54.4
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.3e-11 72.0 84 51.2
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 2.3e-11 72.0 79 55.7
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 3.0e-11 71.6 80 53.8
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 3.0e-11 71.6 80 58.8
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 3.0e-11 71.6 79 55.7
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.0e-11 71.6 82 52.4
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 5.2e-11 70.9 76 56.6
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 5.2e-11 70.9 76 57.9
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 5.2e-11 70.9 78 53.8
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 6.7e-11 70.5 78 59.0
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 6.7e-11 70.5 76 56.6
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 8.8e-11 70.1 80 58.8
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 8.8e-11 70.1 78 55.1
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 1.1e-10 69.7 70 57.1
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.1e-10 69.7 80 56.2
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.1e-10 69.7 89 49.4
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.5e-10 69.3 75 58.7
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.5e-10 69.3 83 55.4
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.5e-10 69.3 78 59.0
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.5e-10 69.3 75 56.0
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 2.0e-10 68.9 53 66.0
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 2.0e-10 68.9 78 57.7
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.6e-10 68.6 79 54.4
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 3.3e-10 68.2 78 51.3
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 3.3e-10 68.2 78 53.8
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.3e-10 68.2 78 53.8
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 4.4e-10 67.8 78 53.8
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 5.7e-10 67.4 80 58.8
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 5.7e-10 67.4 79 54.4
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.7e-10 67.4 75 60.0
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 5.7e-10 67.4 77 58.4
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 5.7e-10 67.4 80 50.0
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 7.5e-10 67.0 76 59.2
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.5e-10 67.0 76 53.9
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 7.5e-10 67.0 81 55.6
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 9.7e-10 66.6 56 60.7
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.7e-10 66.6 78 52.6
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.7e-09 65.9 78 52.6
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.8e-09 65.1 78 51.3
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 2.8e-09 65.1 78 51.3
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 2.8e-09 65.1 82 50.0
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 3.7e-09 64.7 77 50.6
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 3.7e-09 64.7 78 51.3
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 3.7e-09 64.7 56 58.9
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.8e-09 64.3 80 52.5
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 4.8e-09 64.3 78 52.6
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 6.3e-09 63.9 61 60.7
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 6.3e-09 63.9 78 52.6
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 8.2e-09 63.5 79 49.4
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 8.2e-09 63.5 78 52.6
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 8.2e-09 63.5 79 51.9
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 1.1e-08 63.2 78 52.6
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.1e-08 63.2 79 49.4
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.4e-08 62.8 75 57.3
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.4e-08 62.8 75 57.3
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 1.4e-08 62.8 76 51.3
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.8e-08 62.4 76 55.3
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.8e-08 62.4 80 52.5
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 1.8e-08 62.4 76 51.3
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 2.4e-08 62.0 76 51.3
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.4e-08 62.0 78 48.7
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 2.4e-08 62.0 78 48.7
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 4.1e-08 61.2 79 48.1
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.1e-08 61.2 78 52.6
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 5.3e-08 60.8 74 55.4
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 5.3e-08 60.8 74 51.4
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.0e-08 60.5 74 52.7
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 7.0e-08 60.5 80 48.8
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 9.1e-08 60.1 75 48.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 9.1e-08 60.1 75 50.7
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 9.1e-08 60.1 76 52.6
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.2e-07 59.7 78 51.3
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.6e-07 59.3 75 50.7
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.6e-07 59.3 74 48.6
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.0e-07 58.9 80 48.8
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 2.0e-07 58.9 75 46.7
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.7e-07 58.5 82 48.8
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 2.7e-07 58.5 60 56.7
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 2.7e-07 58.5 84 51.2
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.7e-07 58.5 74 54.1
CsaV3_5G000560 Cucumis sativus L. HOM05D004051 ORTHO05D004480 3.5e-07 58.2 37 78.4
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.5e-07 58.2 75 52.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 3.5e-07 58.2 75 52.0
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 4.5e-07 57.8 75 50.7
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 4.5e-07 57.8 78 55.1
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 5.9e-07 57.4 80 48.8
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 5.9e-07 57.4 75 49.3
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 5.9e-07 57.4 77 53.2
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 5.9e-07 57.4 92 45.7
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 7.7e-07 57.0 78 46.2
Os06g0530200 Oryza sativa ssp. japonica HOM05D004051 ORTHO05D004480 7.7e-07 57.0 95 42.1
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 1.0e-06 56.6 75 49.3
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 1.0e-06 56.6 75 49.3
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.3e-06 56.2 77 53.2
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.3e-06 56.2 74 50.0
Zm00001eb383200 Zea mays HOM05D004051 ORTHO05D004480 1.3e-06 56.2 89 44.9
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 2.9e-06 55.1 63 54.0
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 5.0e-06 54.3 78 47.4
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 6.5e-06 53.9 74 50.0
Aqoxy7G00101 Aquilegia oxysepala HOM05D002868 ORTHO05D023304 8.5e-06 53.5 60 55.0


User provided reference genes

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