Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 2410.2 1242 100.0
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 0.0e+00 1322.0 1293 57.3
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1224.2 1336 53.9
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1193.3 1258 55.4
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1169.5 1174 56.4
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1154.8 1265 54.2
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1146.3 1152 56.2
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1144.8 1309 50.3
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1139.4 1287 52.5
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1137.9 1271 52.6
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1137.5 1277 51.8
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1128.6 1245 52.4
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1118.2 1289 52.1
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1110.1 1266 51.8
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1109.0 1312 51.1
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1100.9 1320 49.8
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1087.8 1292 50.5
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1086.2 1243 51.5
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1080.1 1294 50.0
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1078.9 1149 52.7
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 8.5e-312 1074.7 1291 50.3
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.2e-311 1071.6 1315 49.4
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 7.6e-311 1070.8 1140 53.6
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 1.7e-310 1069.7 1276 50.5
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 2.9e-310 1068.9 984 58.2
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 4.2e-309 1065.1 1291 49.3
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 5.4e-309 1064.7 1440 46.0
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 7.1e-309 1064.3 1296 50.2
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 7.1e-309 1064.3 1268 50.6
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 6.0e-308 1061.2 1280 49.8
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 7.9e-308 1060.8 1275 49.7
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 1.5e-306 1056.6 1293 49.7
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 3.3e-306 1055.4 1271 49.9
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 1.1e-304 1050.4 1282 49.5
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 1.4e-304 1050.0 1265 48.9
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 2.4e-304 1049.3 1304 48.4
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 2.0e-303 1046.2 1338 47.9
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 2.0e-303 1046.2 1159 52.5
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.8e-303 1044.6 1296 49.3
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 2.9e-302 1042.3 1298 48.4
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.8e-302 1042.0 1296 49.2
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 1.6e-300 1036.6 1166 51.9
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 3.5e-300 1035.4 1369 47.6
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 3.9e-299 1031.9 1203 51.1
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.3e-297 1026.9 1334 48.7
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 2.1e-297 1026.2 1321 47.9
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.1e-297 1026.2 1315 49.3
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 2.8e-297 1025.8 1306 48.2
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 5.3e-296 1021.5 1138 52.9
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 2.6e-295 1019.2 1145 51.9
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 4.5e-295 1018.5 1142 53.1
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 7.6e-295 1017.7 1254 49.4
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 2.2e-294 1016.1 1277 48.6
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 2.2e-294 1016.1 1132 51.4
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 4.9e-294 1015.0 1280 48.7
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 4.9e-294 1015.0 1271 48.5
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 1.1e-293 1013.8 1308 47.2
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 3.0e-291 1005.7 1313 47.2
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 6.7e-291 1004.6 1236 48.5
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 1.5e-290 1003.4 1030 55.0
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 1.9e-290 1003.0 1268 48.5
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.1e-289 999.6 969 56.7
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 2.8e-289 999.2 1252 48.9
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 3.1e-288 995.7 1316 46.2
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 6.9e-288 994.6 1252 48.1
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 2.0e-287 993.0 1259 48.5
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 8.5e-286 987.6 1256 48.1
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 1.2e-284 983.8 1345 46.7
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 6.1e-284 981.5 1257 47.7
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 7.9e-284 981.1 1276 46.9
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.0e-283 980.7 1272 46.9
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 3.0e-283 979.2 1183 49.4
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 6.7e-283 978.0 1263 47.8
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 9.7e-282 974.2 1252 47.7
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 9.7e-282 974.2 1252 47.7
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 1.6e-281 973.4 1285 46.5
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 2.8e-281 972.6 1357 45.5
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 6.3e-281 971.5 1253 47.6
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 2.4e-280 969.5 1253 47.6
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 2.4e-280 969.5 1253 47.6
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 4.1e-280 968.8 1114 51.9
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.5e-279 966.8 1326 46.5
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.2e-278 963.0 1329 46.4
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 8.5e-278 961.1 1258 47.1
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.0e-275 954.1 1002 54.7
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 3.0e-275 952.6 1288 45.9
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 3.9e-275 952.2 1312 45.9
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 2.6e-274 949.5 1247 47.1
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 1.3e-273 947.2 1267 46.9
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 5.5e-261 905.2 967 52.3
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.2e-255 887.5 1150 49.0
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 4.1e-248 862.4 1192 43.9
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 2.9e-246 856.3 1181 46.0
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 3.6e-244 849.4 1434 40.8
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 2.7e-239 833.2 1245 42.4
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.7e-238 830.5 1247 42.4
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 5.4e-232 808.9 1139 44.9
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 3.7e-225 786.2 1227 41.6
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 2.3e-211 740.3 969 46.6
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.4e-208 731.1 551 67.7
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 7.1e-208 728.8 1219 40.7
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 8.4e-201 705.3 1266 39.3
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 2.5e-197 693.7 513 67.8
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 1.3e-196 691.4 934 44.8
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.8e-182 644.4 522 63.2
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 6.9e-171 605.9 982 38.9
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 5.3e-155 553.1 1144 35.1
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 6.7e-150 536.2 1241 32.0
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 2.2e-145 521.2 685 45.3
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 5.1e-105 387.1 966 28.8
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.9e-92 344.0 748 36.6
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.5e-80 305.1 243 64.6
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 9.6e-64 250.0 326 46.3
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 7.9e-58 230.3 185 61.6
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-54 217.6 236 49.2
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 4.6e-50 204.5 139 74.8
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 9.7e-48 196.8 175 57.7
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 2.5e-43 182.2 608 27.8
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 2.0e-29 136.0 106 61.3
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 1.0e-28 133.7 237 36.3
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.9e-28 132.1 99 66.7
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 7.2e-27 127.5 84 69.0
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.4e-25 123.2 108 59.3
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.7e-23 116.3 106 53.8
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 6.3e-23 114.4 121 52.9
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 2.5e-19 102.4 125 49.6
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 4.7e-18 98.2 117 46.2
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.0e-17 95.5 120 47.5
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.0e-16 92.8 125 46.4
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.2e-15 89.4 450 26.9
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 7.7e-13 80.9 90 52.2
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 3.3e-11 75.5 89 52.8
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 5.5e-11 74.7 72 50.0
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 1.4e-09 70.1 146 33.6
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.3e-09 69.3 85 40.0
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 1.7e-07 63.2 101 33.7
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 2.4e-06 59.3 54 53.7
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 7.0e-06 57.8 40 62.5


User provided reference genes

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