Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 7.8e-100 367.1 180 100.0
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 4.8e-73 278.1 168 76.2
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 4.1e-72 275.0 180 75.6
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 6.9e-72 274.2 179 72.1
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 7.6e-71 270.8 175 72.0
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 3.8e-70 268.5 174 74.7
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 8.5e-70 267.3 174 73.6
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 5.1e-67 258.1 176 71.0
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 4.3e-66 255.0 176 70.5
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 5.7e-66 254.6 176 68.8
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 1.3e-65 253.4 177 70.6
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 1.3e-65 253.4 174 68.4
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.6e-65 253.1 176 69.9
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 2.2e-65 252.7 176 71.0
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 2.8e-65 252.3 174 68.4
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 2.8e-65 252.3 174 68.4
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 3.7e-65 251.9 174 69.0
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 3.7e-65 251.9 180 69.4
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 8.2e-65 250.8 173 67.6
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 1.1e-64 250.4 176 68.2
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 1.1e-64 250.4 182 65.4
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.4e-64 250.0 176 68.2
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 1.4e-64 250.0 176 69.3
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 2.4e-64 249.2 174 69.0
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 4.1e-64 248.4 176 68.2
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 5.3e-64 248.1 176 67.6
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 6.9e-64 247.7 176 68.2
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 9.1e-64 247.3 168 68.5
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.0e-63 246.1 171 68.4
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 3.4e-63 245.4 176 69.3
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 4.5e-63 245.0 180 66.7
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 5.9e-63 244.6 173 68.2
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 5.9e-63 244.6 176 65.9
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 1.0e-62 243.8 166 71.1
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.9e-62 242.3 176 68.2
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 8.5e-62 240.7 179 63.1
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.1e-61 240.4 167 67.7
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 1.4e-61 240.0 176 67.6
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 1.4e-61 240.0 174 64.9
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 2.5e-61 239.2 179 62.6
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 3.2e-61 238.8 168 67.3
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 5.5e-61 238.0 178 65.2
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 7.2e-61 237.7 169 63.9
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 9.4e-61 237.3 163 71.2
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 9.4e-61 237.3 179 62.6
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 1.2e-60 236.9 168 66.1
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 2.7e-60 235.7 173 65.3
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 3.6e-60 235.3 169 66.3
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 4.6e-60 235.0 171 65.5
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 7.9e-60 234.2 173 64.2
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 1.4e-59 233.4 177 61.0
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 3.0e-59 232.3 173 63.0
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 8.8e-59 230.7 170 64.1
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 2.0e-58 229.6 175 62.3
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 5.7e-58 228.0 159 67.9
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 5.7e-58 228.0 159 67.9
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 5.7e-58 228.0 173 63.6
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 7.4e-58 227.6 175 61.7
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.7e-57 226.5 159 67.3
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.7e-57 226.5 159 67.9
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.7e-57 225.3 159 67.3
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.7e-57 225.3 159 67.3
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 3.7e-57 225.3 169 62.1
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 4.8e-57 224.9 176 60.2
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 6.3e-57 224.6 176 58.5
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 5.3e-56 221.5 168 63.1
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 2.6e-55 219.2 179 60.9
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 3.4e-55 218.8 176 59.1
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 1.3e-54 216.9 173 58.4
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 2.2e-54 216.1 176 55.1
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 1.1e-53 213.8 174 57.5
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 1.2e-52 210.3 176 58.0
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 2.3e-51 206.1 176 58.0
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 8.8e-51 204.1 151 67.5
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 2.8e-49 199.1 132 72.7
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 3.7e-49 198.7 132 72.7
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 4.2e-45 185.3 169 51.5
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 2.3e-43 179.5 173 52.6
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 2.0e-42 176.4 174 51.7
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 9.7e-42 174.1 126 65.9
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 2.4e-40 169.5 129 64.3
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 5.0e-38 161.8 130 60.0
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 5.5e-37 158.3 161 45.3
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 2.7e-31 139.4 103 63.1
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 2.7e-31 139.4 114 68.4
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 1.4e-27 127.1 168 40.5
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 3.0e-27 125.9 147 41.5
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.0e-22 110.9 173 35.8
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 1.8e-19 100.1 69 62.3
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 5.2e-19 98.6 84 48.8
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 1.2e-15 87.4 56 62.5
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 1.6e-15 87.0 63 52.4
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 6.6e-14 81.6 56 64.3
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 9.5e-13 77.8 57 57.9
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 1.1e-11 74.3 168 29.2
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 7.5e-10 68.2 87 43.7
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 9.8e-10 67.8 40 77.5
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 6.4e-09 65.1 87 41.4
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 8.3e-09 64.7 87 41.4
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 2.4e-08 63.2 57 56.1
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 6.6e-06 55.1 50 40.0


User provided reference genes

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