Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.8e-279 965.3 488 100.0
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.9e-257 892.1 498 92.0
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 9.0e-199 697.2 432 85.0
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 1.4e-154 550.4 494 59.9
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 3.7e-144 515.8 519 54.9
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 5.2e-138 495.4 508 53.0
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 2.6e-137 493.0 517 52.2
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 1.7e-133 480.3 509 50.9
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 8.8e-130 468.0 499 53.1
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 3.4e-129 466.1 515 50.7
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 3.7e-128 462.6 505 49.1
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 5.6e-124 448.7 489 49.5
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 3.6e-123 446.0 528 47.3
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 8.0e-123 444.9 507 47.9
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 2.3e-122 443.4 511 49.3
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 3.0e-122 443.0 508 47.8
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 6.8e-122 441.8 489 51.7
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 6.8e-122 441.8 508 48.2
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 5.7e-121 438.7 523 47.0
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 4.9e-120 435.6 535 48.0
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 6.4e-120 435.3 508 46.9
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 3.2e-119 433.0 544 45.4
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 4.6e-118 429.1 508 46.5
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 2.3e-117 426.8 496 49.0
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 3.9e-117 426.0 509 47.3
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 5.0e-117 425.6 509 47.7
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 8.6e-117 424.9 510 46.9
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.5e-116 423.3 513 46.2
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 2.0e-113 413.7 508 47.8
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 2.0e-113 413.7 508 47.8
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 4.4e-113 412.5 506 46.2
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 1.7e-112 410.6 507 46.4
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 3.7e-112 409.5 506 45.3
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 8.3e-112 408.3 519 44.9
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.4e-111 407.5 503 46.1
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 2.4e-111 406.8 507 45.8
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 4.1e-111 406.0 516 46.7
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 5.4e-111 405.6 507 46.4
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 9.2e-111 404.8 508 43.5
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 2.7e-110 403.3 507 46.4
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 7.8e-110 401.7 509 46.2
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 3.0e-109 399.8 515 46.8
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 6.6e-109 398.7 517 45.1
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 6.6e-109 398.7 509 44.6
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 9.5e-108 394.8 505 45.3
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 1.6e-107 394.0 499 45.3
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 3.6e-107 392.9 482 46.1
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 6.2e-107 392.1 515 45.2
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 8.1e-107 391.7 511 44.0
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 8.1e-107 391.7 514 45.5
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.1e-106 391.3 504 43.8
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.1e-106 391.3 510 44.9
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 1.8e-106 390.6 510 44.3
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 2.3e-106 390.2 510 44.9
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 3.1e-106 389.8 509 43.8
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 8.9e-106 388.3 510 43.5
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 1.5e-105 387.5 516 45.0
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 2.0e-105 387.1 515 44.5
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 2.6e-105 386.7 522 44.4
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 5.8e-105 385.6 513 45.2
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 2.9e-104 383.3 513 44.6
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 3.7e-104 382.9 499 44.7
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 6.4e-104 382.1 496 45.6
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 3.2e-103 379.8 510 45.7
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.3e-101 374.4 518 41.5
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 2.3e-101 373.6 498 43.8
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 5.1e-101 372.5 505 43.2
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 4.3e-100 369.4 515 42.9
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 7.3e-100 368.6 504 43.7
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 1.2e-99 367.9 509 41.5
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 6.2e-99 365.5 538 42.2
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 2.3e-98 363.6 420 50.2
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 4.4e-97 359.4 508 42.3
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 2.2e-96 357.1 521 41.3
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.9e-95 354.0 591 38.2
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.4e-95 353.6 525 41.3
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 7.1e-95 352.1 528 42.2
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-94 351.3 526 40.9
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-94 351.3 527 41.2
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.5e-94 349.7 525 41.0
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.7e-93 347.4 525 40.8
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.7e-93 347.4 530 40.0
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 1.1e-92 344.7 515 41.2
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 7.3e-92 342.0 511 40.7
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.6e-92 341.7 541 39.2
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 4.7e-91 339.3 515 40.8
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.1e-90 338.2 515 39.6
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 2.4e-90 337.0 513 39.8
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 8.9e-90 335.1 503 40.4
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.2e-89 334.7 515 39.6
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.0e-89 334.0 513 39.6
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 2.0e-89 334.0 509 39.9
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 2.6e-89 333.6 516 40.3
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 2.6e-89 333.6 516 40.3
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 5.8e-89 332.4 516 40.1
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 5.8e-89 332.4 389 45.8
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 2.2e-88 330.5 519 39.7
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 4.9e-88 329.3 510 40.0
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 4.9e-88 329.3 395 45.6
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.4e-87 327.8 457 42.7
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 9.3e-87 325.1 515 40.0
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 2.3e-85 320.5 516 39.3
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 2.3e-85 320.5 516 39.3
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 5.1e-85 319.3 516 38.8
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 5.1e-85 319.3 416 43.3
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.5e-84 317.8 513 40.0
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.7e-80 304.3 433 41.1
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 7.1e-79 298.9 408 41.7
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 1.6e-78 297.7 511 38.2
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 2.3e-77 293.9 655 33.3
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 1.6e-75 287.7 510 39.4
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 4.8e-75 286.2 334 45.5
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 5.3e-74 282.7 536 36.0
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 2.6e-73 280.4 541 34.0
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 3.5e-70 270.0 523 35.8
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 5.1e-69 266.2 508 36.0
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 1.3e-67 261.5 541 35.5
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 8.1e-67 258.8 343 42.6
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 2.0e-65 254.2 516 34.3
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 2.2e-64 250.8 397 38.8
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 1.1e-58 231.9 277 48.7
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 1.8e-58 231.1 216 53.2
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 9.7e-52 208.8 471 32.5
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.3e-50 203.0 346 35.5
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 1.4e-47 194.9 288 42.0
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 4.2e-47 193.4 268 43.3
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 4.2e-47 193.4 430 34.9
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 3.0e-45 187.2 258 43.0
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 3.3e-44 183.7 287 42.5
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 6.7e-37 159.5 182 48.4
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 3.3e-36 157.1 349 34.4
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 2.6e-33 147.5 120 63.3
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 2.1e-30 137.9 155 43.9
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 4.7e-30 136.7 155 44.5
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 2.6e-28 131.0 150 44.0
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 2.9e-24 117.5 501 26.3
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 5.0e-24 116.7 218 34.9
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 2.5e-23 114.4 174 40.2
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 1.2e-22 112.1 116 50.9
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 2.7e-22 110.9 207 33.3
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 8.0e-22 109.4 164 40.2
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 4.0e-21 107.1 137 45.3
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 3.5e-17 94.0 637 21.7
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 8.0e-14 82.8 114 44.7
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 6.3e-11 73.2 189 26.5
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 5.9e-09 66.6 203 26.6
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.5e-07 62.0 261 26.1
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 1.9e-07 61.6 96 35.4
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 5.6e-07 60.1 71 50.7


User provided reference genes

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