Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 3.4e-264 914.4 458 100.0
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.2e-221 773.1 470 86.0
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.7e-199 699.5 432 85.0
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 3.7e-130 469.2 454 56.2
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.0e-123 446.8 486 52.7
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 2.5e-110 403.3 468 49.6
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 3.3e-110 402.9 472 50.0
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 5.8e-107 392.1 455 49.5
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 1.7e-106 390.6 466 47.2
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 1.4e-105 387.5 466 47.2
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.3e-103 380.9 456 49.6
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 4.0e-100 369.4 459 44.9
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 3.4e-99 366.3 458 47.2
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 4.4e-99 365.9 464 45.9
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 5.8e-99 365.5 455 46.6
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 5.8e-99 365.5 492 45.7
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 9.9e-99 364.8 471 45.0
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.3e-98 364.4 468 46.2
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 2.9e-98 363.2 482 44.8
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 4.2e-97 359.4 471 43.9
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 5.4e-97 359.0 449 48.1
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 6.0e-96 355.5 482 44.2
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 2.3e-95 353.6 464 43.5
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 5.1e-95 352.4 477 44.2
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 6.6e-95 352.1 465 43.9
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 2.5e-94 350.1 466 45.1
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 9.6e-94 348.2 503 41.7
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 1.6e-93 347.4 462 44.2
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 2.8e-93 346.7 464 46.1
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 3.6e-93 346.3 464 45.9
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.1e-92 344.7 466 44.8
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 1.4e-92 344.4 463 44.5
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 1.8e-92 344.0 466 44.6
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.4e-92 343.6 466 44.2
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 2.4e-92 343.6 498 43.2
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 6.9e-92 342.0 475 44.8
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 2.9e-90 336.7 469 44.1
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 1.4e-89 334.3 467 43.7
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 5.4e-89 332.4 461 43.2
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 1.2e-88 331.3 477 42.1
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 2.7e-88 330.1 470 43.4
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 4.6e-88 329.3 472 42.8
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 7.9e-88 328.6 454 44.3
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 7.9e-88 328.6 461 42.3
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 7.9e-88 328.6 462 42.6
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 7.9e-88 328.6 461 42.3
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 1.0e-87 328.2 470 41.7
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 1.0e-87 328.2 471 43.1
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 1.3e-87 327.8 467 44.3
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 3.9e-87 326.2 467 43.3
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 5.1e-87 325.9 470 43.0
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 5.1e-87 325.9 463 43.6
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 5.1e-87 325.9 463 44.3
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 6.7e-87 325.5 465 42.2
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 1.1e-86 324.7 464 42.5
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 5.6e-86 322.4 464 41.8
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 1.3e-85 321.2 464 42.5
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.1e-84 318.2 454 43.8
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.1e-84 318.2 462 40.3
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.8e-84 317.4 458 41.5
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 1.8e-84 317.4 462 41.3
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 5.3e-84 315.8 462 41.1
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 9.0e-84 315.1 461 41.6
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.3e-82 311.2 460 41.5
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 2.9e-82 310.1 473 41.9
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 1.2e-80 304.7 465 41.3
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.2e-80 304.7 458 41.3
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 3.5e-80 303.1 463 41.3
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 2.3e-79 300.4 493 40.0
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 3.9e-79 299.7 438 41.1
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 2.5e-78 297.0 453 40.0
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 4.3e-78 296.2 463 40.0
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.1e-77 293.9 467 38.1
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 2.8e-77 293.5 462 39.0
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 6.2e-77 292.4 477 39.6
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 8.2e-77 292.0 473 39.3
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.1e-76 291.6 486 39.1
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.4e-76 290.4 486 39.1
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.3e-76 289.3 487 38.6
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 6.9e-76 288.9 460 39.8
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 6.9e-76 288.9 481 38.3
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.4e-75 286.6 479 39.2
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 1.2e-72 278.1 468 40.0
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.6e-72 277.7 493 37.3
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 4.6e-72 276.2 455 39.1
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 4.6e-72 276.2 456 40.4
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 3.0e-71 273.5 540 34.8
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 3.9e-71 273.1 461 38.6
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 7.4e-70 268.9 455 38.2
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 9.7e-70 268.5 469 37.7
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 1.6e-69 267.7 471 38.4
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 1.6e-69 267.7 471 38.4
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 2.8e-69 266.9 468 38.7
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 3.7e-69 266.5 471 38.2
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 3.1e-68 263.5 470 38.3
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.5e-67 261.2 468 36.3
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 2.0e-67 260.8 471 37.4
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 5.9e-67 259.2 467 36.8
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.3e-66 258.1 476 37.6
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 3.8e-66 256.5 462 37.2
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 8.5e-66 255.4 657 31.4
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.1e-65 255.0 467 36.6
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 4.2e-65 253.1 467 37.3
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 4.2e-65 253.1 468 37.8
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 4.2e-65 253.1 460 36.1
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 1.2e-64 251.5 468 37.6
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 1.5e-62 244.6 473 34.9
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 4.3e-62 243.0 467 36.8
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 5.7e-62 242.7 466 34.5
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 3.7e-61 240.0 477 33.1
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 6.9e-60 235.7 480 34.4
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 3.8e-58 229.9 416 36.3
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 2.1e-56 224.2 324 40.7
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 3.6e-56 223.4 482 35.1
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 2.8e-53 213.8 351 38.7
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 1.2e-51 208.4 320 39.4
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 4.2e-49 199.9 470 34.9
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.4e-44 184.9 444 33.3
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 7.0e-44 182.6 292 40.8
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 7.7e-43 179.1 454 31.7
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 4.2e-41 173.3 269 39.0
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 7.2e-41 172.6 238 43.7
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.2e-40 171.8 142 62.7
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 3.0e-39 167.2 281 39.5
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 6.7e-39 166.0 322 33.9
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.3e-37 161.8 182 47.8
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 2.2e-37 161.0 254 43.3
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 4.1e-36 156.8 264 39.4
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 9.1e-36 155.6 329 33.1
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 2.3e-31 141.0 240 37.5
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 3.4e-30 137.1 138 52.2
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 2.2e-29 134.4 234 42.3
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 2.2e-29 134.4 254 38.2
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 2.3e-26 124.4 175 40.6
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 3.8e-26 123.6 206 36.9
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 3.6e-24 117.1 145 46.2
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 6.1e-24 116.3 151 41.7
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 3.8e-18 97.1 136 44.1
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 1.4e-12 78.6 215 26.5
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 1.7e-10 71.6 203 26.6
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 6.6e-10 69.7 442 20.8
TWI39G1179 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.4e-07 62.0 102 42.2
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 2.3e-07 61.2 71 52.1


User provided reference genes

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