Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 3.6e-146 521.5 259 100.0
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 5.1e-68 261.9 261 54.4
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 8.0e-37 158.3 215 40.0
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 3.3e-35 152.9 263 37.3
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 3.3e-35 152.9 194 43.3
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 9.7e-35 151.4 227 38.3
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.7e-34 150.6 258 36.0
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 3.7e-34 149.4 263 36.9
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 3.7e-34 149.4 211 39.8
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 8.2e-34 148.3 250 36.4
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 8.2e-34 148.3 237 35.4
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 1.1e-33 147.9 227 38.3
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 1.1e-33 147.9 254 35.0
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 3.1e-33 146.4 240 36.7
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 4.1e-33 146.0 227 36.1
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 5.3e-33 145.6 243 37.9
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 7.0e-33 145.2 233 37.3
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 1.2e-32 144.4 176 42.6
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 2.0e-32 143.7 176 42.6
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 2.0e-32 143.7 211 37.9
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 3.5e-32 142.9 177 39.5
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 3.5e-32 142.9 212 36.3
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 3.5e-32 142.9 232 35.8
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 5.9e-32 142.1 216 36.6
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 5.9e-32 142.1 227 35.7
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 5.9e-32 142.1 207 37.7
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 5.9e-32 142.1 238 35.7
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 7.7e-32 141.7 192 38.5
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 7.7e-32 141.7 175 42.9
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 1.0e-31 141.4 211 37.0
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 1.7e-31 140.6 177 39.5
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 1.7e-31 140.6 229 36.2
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 1.7e-31 140.6 231 37.7
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 1.7e-31 140.6 221 37.1
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 2.2e-31 140.2 232 36.2
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 2.2e-31 140.2 200 40.5
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 3.8e-31 139.4 165 43.6
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 3.8e-31 139.4 201 39.8
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 3.8e-31 139.4 176 41.5
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 3.8e-31 139.4 182 39.6
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 5.0e-31 139.0 182 40.7
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 6.5e-31 138.7 173 42.8
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 6.5e-31 138.7 233 36.9
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 6.5e-31 138.7 182 40.1
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 6.5e-31 138.7 247 35.6
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 8.5e-31 138.3 225 36.4
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 1.5e-30 137.5 225 35.6
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 1.5e-30 137.5 178 40.4
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 1.5e-30 137.5 236 36.4
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 4.2e-30 136.0 235 37.0
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 4.2e-30 136.0 233 36.5
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 4.2e-30 136.0 212 37.3
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 5.5e-30 135.6 173 42.2
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 5.5e-30 135.6 259 34.4
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 7.2e-30 135.2 227 33.9
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 9.4e-30 134.8 262 35.1
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 1.2e-29 134.4 245 36.7
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 1.6e-29 134.0 256 33.6
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 3.6e-29 132.9 203 38.4
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 3.6e-29 132.9 227 34.4
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 3.6e-29 132.9 211 37.9
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 3.6e-29 132.9 226 35.0
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 4.7e-29 132.5 213 36.6
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 8.0e-29 131.7 194 37.1
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 8.0e-29 131.7 218 35.8
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 1.0e-28 131.3 229 37.1
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 2.3e-28 130.2 254 33.1
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 3.0e-28 129.8 182 39.0
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 3.0e-28 129.8 213 35.7
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 4.0e-28 129.4 258 33.3
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 4.0e-28 129.4 227 33.9
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 5.2e-28 129.0 138 42.8
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 1.2e-27 127.9 216 36.1
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 4.4e-27 125.9 237 33.8
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 4.4e-27 125.9 244 33.6
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 4.4e-27 125.9 255 32.9
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 7.5e-27 125.2 211 36.0
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.7e-26 124.0 233 33.9
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 2.2e-26 123.6 250 34.4
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 3.7e-26 122.9 218 36.2
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 6.3e-26 122.1 180 36.1
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 8.3e-26 121.7 168 39.9
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 7.0e-25 118.6 166 40.4
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 1.2e-24 117.9 168 39.3
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 1.2e-24 117.9 168 39.3
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 1.6e-24 117.5 168 39.3
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 2.0e-24 117.1 164 37.8
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 2.0e-24 117.1 136 44.1
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 2.0e-24 117.1 200 33.5
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 3.5e-24 116.3 238 31.9
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 4.5e-24 115.9 168 39.3
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 5.9e-24 115.5 233 33.9
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 5.9e-24 115.5 221 33.0
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 7.7e-24 115.2 165 38.8
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 1.7e-23 114.0 168 38.1
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 5.0e-23 112.5 207 32.9
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 1.5e-22 110.9 132 44.7
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 5.5e-22 109.0 211 33.2
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 4.7e-21 105.9 173 37.0
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 1.0e-20 104.8 185 34.1
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 5.7e-19 99.0 216 29.6
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 2.2e-18 97.1 183 32.8
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 3.7e-18 96.3 178 33.7
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 1.1e-14 84.7 196 29.1
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 1.2e-11 74.7 91 42.9
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 4.4e-11 72.8 131 32.1
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 2.8e-10 70.1 88 42.0
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 1.3e-07 61.2 170 27.6
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 5.0e-07 59.3 85 36.5
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 2.5e-06 57.0 177 27.7


User provided reference genes

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