Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.6e-127 459.5 245 100.0
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 6.7e-78 294.7 256 64.8
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 8.8e-78 294.3 252 67.1
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 8.8e-78 294.3 255 66.3
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 7.4e-77 291.2 253 64.4
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.2e-76 289.7 251 64.1
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 3.7e-76 288.9 249 65.5
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 8.2e-76 287.7 254 65.4
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 1.1e-75 287.3 246 67.1
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 1.4e-75 287.0 246 65.9
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.4e-75 287.0 255 65.9
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 5.3e-75 285.0 254 65.0
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 9.1e-75 284.3 254 64.6
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.9e-73 279.3 260 64.6
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 5.0e-73 278.5 254 63.0
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.5e-72 276.9 254 62.6
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 4.2e-72 275.4 254 62.2
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 4.2e-72 275.4 261 62.8
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 1.2e-71 273.9 244 62.7
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.6e-71 273.5 254 62.2
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 2.1e-71 273.1 254 61.8
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 2.7e-71 272.7 254 61.8
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 4.7e-71 271.9 254 61.4
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 4.7e-71 271.9 248 62.1
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 6.1e-71 271.6 249 62.2
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.0e-70 270.8 249 63.1
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.0e-70 270.8 261 61.7
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.0e-70 270.8 257 63.4
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 2.3e-70 269.6 252 61.9
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 2.3e-70 269.6 251 61.0
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 1.2e-69 267.3 254 61.0
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 1.2e-69 267.3 258 59.7
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 1.5e-69 266.9 254 61.0
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.5e-69 266.9 286 55.2
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.5e-69 266.9 254 61.0
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 2.0e-69 266.5 254 61.4
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 2.6e-69 266.2 256 61.7
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 3.3e-69 265.8 251 61.4
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 5.7e-69 265.0 255 62.4
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 7.5e-69 264.6 253 62.5
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.7e-69 264.2 253 60.1
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.7e-68 263.5 254 60.2
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.7e-68 263.5 254 61.0
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.7e-68 263.5 259 60.6
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.7e-68 263.5 255 61.2
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 2.2e-68 263.1 254 61.4
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.2e-68 263.1 253 59.7
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.2e-68 263.1 254 60.6
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 2.8e-68 262.7 259 60.6
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 3.7e-68 262.3 249 61.0
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 8.2e-68 261.2 249 60.6
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.1e-67 260.8 254 60.6
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 1.8e-67 260.0 250 60.4
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.8e-67 260.0 247 60.3
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 2.4e-67 259.6 250 60.8
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 2.4e-67 259.6 256 60.5
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.1e-67 258.8 253 59.3
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 5.3e-67 258.5 244 61.9
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 9.1e-67 257.7 247 59.9
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 2.0e-66 256.5 284 57.0
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 3.5e-66 255.8 253 58.9
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 4.5e-66 255.4 258 58.1
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 1.3e-65 253.8 249 61.0
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 1.7e-65 253.4 249 59.8
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 2.2e-65 253.1 244 61.1
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 2.9e-65 252.7 236 60.2
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 3.8e-65 252.3 245 60.4
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 1.1e-64 250.8 245 60.0
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.1e-64 250.8 253 58.1
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 5.5e-64 248.4 247 59.1
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 1.2e-63 247.3 240 60.0
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 1.6e-63 246.9 257 56.0
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 2.1e-63 246.5 252 58.3
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 2.7e-63 246.1 243 56.8
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.4e-62 243.8 234 61.5
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 1.8e-62 243.4 256 57.8
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 2.3e-62 243.0 255 58.4
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 3.0e-62 242.7 266 56.8
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 4.0e-62 242.3 255 56.1
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 1.5e-61 240.4 218 61.9
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 2.6e-61 239.6 242 57.9
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.6e-61 239.6 246 57.7
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 4.4e-61 238.8 249 58.6
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 4.4e-61 238.8 251 57.8
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 3.7e-60 235.7 242 58.7
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 8.3e-60 234.6 248 58.1
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.4e-59 233.8 248 58.1
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.8e-59 233.4 249 58.2
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 3.1e-59 232.6 248 58.1
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 5.4e-59 231.9 252 55.2
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 7.0e-59 231.5 228 60.1
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 9.1e-59 231.1 244 57.8
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.6e-58 230.3 254 56.3
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 2.0e-58 229.9 154 79.9
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 2.0e-58 229.9 253 55.7
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 2.0e-58 229.9 247 57.1
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 2.7e-58 229.6 247 57.9
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 4.5e-58 228.8 302 49.0
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.0e-57 227.6 243 54.3
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 3.8e-57 225.7 243 53.9
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 1.1e-56 224.2 255 54.1
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.5e-56 223.8 250 55.6
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.9e-56 223.4 244 57.0
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.5e-56 223.0 248 56.9
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 7.2e-56 221.5 245 57.1
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 9.5e-56 221.1 270 53.0
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 1.0e-54 217.6 256 54.7
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.4e-54 217.2 150 77.3
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.8e-54 216.9 151 76.8
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 3.7e-52 209.1 229 55.0
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 6.3e-52 208.4 151 76.2
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.8e-51 206.8 230 53.9
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.5e-48 197.2 188 62.8
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 3.6e-47 192.6 216 56.5
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 2.0e-45 186.8 242 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 1.3e-44 184.1 275 44.0
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 1.6e-42 177.2 255 44.7
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 9.5e-40 167.9 219 49.8
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 1.2e-37 161.0 231 47.2
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 5.4e-35 152.1 240 46.2
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 4.6e-34 149.1 267 43.8
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 7.8e-34 148.3 102 76.5
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.0e-33 147.9 176 52.8
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 3.0e-33 146.4 158 57.6
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 5.2e-30 135.6 207 47.3
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.2e-29 134.4 194 45.4
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.5e-29 134.0 96 71.9
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.5e-29 134.0 181 49.2
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 3.4e-29 132.9 124 60.5
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 5.4e-27 125.6 175 48.0
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 4.3e-24 115.9 99 67.7
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 3.2e-19 99.8 216 39.8
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 3.2e-19 99.8 152 44.7
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 4.1e-19 99.4 123 46.3
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 5.1e-17 92.4 60 80.0
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 1.2e-15 87.8 65 70.8
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 4.0e-14 82.8 59 74.6
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 5.2e-14 82.4 57 73.7
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 3.4e-13 79.7 169 34.9
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 2.1e-10 70.5 132 39.4
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 1.3e-09 67.8 78 50.0
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.7e-09 67.4 64 54.7
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 1.6e-07 60.8 96 42.7
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 4.8e-07 59.3 38 71.1


User provided reference genes

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