Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 1.6e-166 589.3 290 100.0
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 2.9e-64 249.6 217 62.2
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 3.8e-64 249.2 217 62.7
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 3.8e-64 249.2 217 62.7
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.1e-63 247.7 217 62.2
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 4.4e-60 235.7 197 64.5
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.3e-56 224.2 185 64.9
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 8.6e-56 221.5 185 63.8
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 7.3e-55 218.4 185 63.8
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 7.3e-55 218.4 185 63.8
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 1.2e-54 217.6 185 62.7
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 2.1e-54 216.9 189 61.9
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 1.0e-53 214.5 185 62.7
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 1.0e-53 214.5 185 62.7
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 1.4e-53 214.2 185 63.2
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 1.8e-53 213.8 133 79.7
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 5.2e-53 212.2 185 62.2
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 6.8e-53 211.8 185 62.2
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 1.2e-52 211.1 185 62.7
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 1.5e-52 210.7 185 62.2
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 1.5e-52 210.7 185 62.2
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 1.5e-52 210.7 185 62.2
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.6e-52 209.9 179 63.7
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 7.5e-52 208.4 185 61.6
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 1.3e-51 207.6 185 61.6
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 1.3e-51 207.6 185 61.6
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 1.3e-51 207.6 185 61.6
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 1.7e-51 207.2 185 61.1
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 1.7e-51 207.2 185 61.1
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.7e-51 206.1 188 60.1
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 4.9e-51 205.7 185 60.5
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 6.4e-51 205.3 185 60.5
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 3.2e-50 203.0 185 60.5
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 1.2e-49 201.1 233 51.9
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 4.6e-49 199.1 101 94.1
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.9e-49 198.7 178 60.7
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 7.8e-49 198.4 185 58.9
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 6.6e-48 195.3 101 93.1
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 1.2e-46 191.0 185 57.3
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 1.6e-46 190.7 191 56.5
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 1.0e-45 188.0 164 61.6
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-45 187.2 102 87.3
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-44 184.5 101 86.1
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 5.8e-44 182.2 103 85.4
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 2.2e-43 180.3 187 53.5
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 2.2e-43 180.3 187 53.5
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-43 179.5 96 87.5
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 6.4e-43 178.7 116 76.7
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 5.4e-42 175.6 101 83.2
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 9.2e-42 174.9 164 59.1
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-41 174.5 173 54.9
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 7.8e-41 171.8 164 59.1
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-40 171.4 219 47.0
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 1.7e-40 170.6 167 57.5
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 2.3e-40 170.2 164 58.5
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 2.3e-40 170.2 164 58.5
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 3.0e-40 169.9 164 59.1
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 3.9e-40 169.5 164 58.5
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 8.6e-40 168.3 164 57.9
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 8.6e-40 168.3 164 57.9
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 1.5e-39 167.5 164 57.9
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 2.5e-39 166.8 164 57.3
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 7.3e-39 165.2 164 57.3
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.2e-38 164.5 164 57.3
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.2e-38 164.5 164 57.3
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 3.6e-38 162.9 164 56.7
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 1.5e-36 157.5 148 60.1
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-36 156.8 166 54.2
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 5.8e-36 155.6 173 52.6
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 4.9e-35 152.5 80 92.5
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 8.3e-35 151.8 162 54.3
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.4e-34 151.0 97 77.3
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.4e-34 150.2 80 88.8
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 3.2e-34 149.8 89 80.9
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 3.2e-34 149.8 161 55.3
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 7.1e-34 148.7 185 49.2
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 2.7e-33 146.7 163 53.4
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 2.7e-33 146.7 162 53.1
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 5.1e-32 142.5 80 86.2
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 1.1e-31 141.4 88 75.0
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 3.3e-31 139.8 142 54.9
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 7.3e-31 138.7 171 47.4
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 4.7e-30 136.0 185 47.0
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 8.1e-30 135.2 79 83.5
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-29 134.8 81 81.5
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 1.2e-28 131.3 68 86.8
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-28 131.0 163 49.1
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 2.4e-26 123.6 123 59.3
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 5.4e-26 122.5 66 83.3
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-24 117.5 81 76.5
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-24 117.1 62 91.9
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-23 114.4 113 54.9
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.1e-22 110.5 135 50.4
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.1e-22 110.5 135 50.4
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 1.1e-21 108.2 69 76.8
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 4.0e-21 106.3 103 55.3
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 8.9e-21 105.1 140 47.9
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 8.9e-21 105.1 165 44.2
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 8.9e-21 105.1 165 44.2
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 9.9e-20 101.7 135 48.1
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-19 100.9 129 48.8
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 3.8e-19 99.8 142 45.1
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 3.8e-19 99.8 135 46.7
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 4.9e-19 99.4 129 48.1
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 6.4e-19 99.0 51 90.2
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-18 97.1 97 59.8
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-18 97.1 97 59.8
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 3.2e-18 96.7 135 46.7
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 3.2e-18 96.7 135 45.9
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 3.2e-18 96.7 135 46.7
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 1.7e-16 90.9 53 86.8
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 5.6e-15 85.9 49 89.8
BraSC48t46297Z Brassica rapa HOM05D045689 ORTHO05D043271 1.3e-14 84.7 56 73.2
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 2.4e-13 80.5 147 35.4
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.4e-12 76.6 118 43.2
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 3.8e-11 73.2 56 58.9
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 8.4e-11 72.0 220 30.5
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 8.4e-11 72.0 133 41.4
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.9e-10 70.9 43 74.4
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 9.3e-10 68.6 36 94.4
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 3.9e-08 63.2 34 91.2
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 7.4e-07 58.9 106 37.7
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 7.4e-07 58.9 42 69.0
Medtr8g059730 Medicago truncatula HOM05D001560 ORTHO05D004675 1.6e-06 57.8 43 58.1
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-06 57.8 34 82.4


User provided reference genes

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