Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 1.5e-234 815.8 415 100.0
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 4.4e-114 415.6 410 57.1
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 4.1e-112 409.1 409 54.8
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 3.0e-110 402.9 403 54.3
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 2.0e-106 390.2 412 53.2
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 7.8e-103 378.3 419 51.6
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 5.1e-102 375.6 415 53.0
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 9.9e-98 361.3 387 54.3
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 9.6e-93 344.7 383 50.9
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 8.1e-92 341.7 412 49.5
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 2.0e-90 337.0 374 50.3
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 3.4e-90 336.3 389 51.4
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 5.8e-90 335.5 393 49.6
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 4.9e-89 332.4 415 49.4
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 1.1e-88 331.3 420 47.9
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 1.9e-88 330.5 445 46.7
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 1.0e-86 324.7 415 49.2
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 1.3e-86 324.3 399 49.1
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 1.5e-85 320.9 380 51.3
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 5.6e-85 318.9 406 48.8
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 9.6e-85 318.2 419 44.6
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 1.6e-84 317.4 406 49.5
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 2.1e-84 317.0 387 47.8
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 4.8e-84 315.8 405 48.4
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 4.8e-84 315.8 421 45.6
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 6.2e-84 315.5 403 48.9
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 1.1e-83 314.7 415 47.7
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 1.4e-83 314.3 425 45.4
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 1.8e-83 313.9 413 47.0
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 1.8e-83 313.9 401 48.4
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 2.4e-83 313.5 410 48.3
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 3.1e-83 313.2 408 46.6
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 4.0e-83 312.8 381 49.1
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 4.0e-83 312.8 361 51.2
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 9.0e-83 311.6 361 51.2
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 1.2e-82 311.2 417 48.4
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 1.2e-82 311.2 417 48.4
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 1.2e-82 311.2 421 44.7
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 2.0e-82 310.5 361 51.0
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 2.0e-82 310.5 450 45.8
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 2.6e-82 310.1 404 48.0
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 1.0e-81 308.1 410 46.3
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 1.7e-81 307.4 435 43.7
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 2.2e-81 307.0 387 47.0
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 2.9e-81 306.6 420 44.8
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 2.9e-81 306.6 415 45.8
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 2.9e-81 306.6 415 45.8
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 3.8e-81 306.2 415 47.2
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 1.9e-80 303.9 421 45.4
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 3.2e-80 303.1 420 45.0
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 4.2e-80 302.8 409 46.7
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 4.2e-80 302.8 404 46.0
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 4.2e-80 302.8 423 44.9
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 1.2e-79 301.2 388 47.7
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 7.9e-79 298.5 387 47.5
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 1.8e-78 297.4 407 45.7
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 1.1e-77 294.7 417 46.5
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 1.5e-77 294.3 404 45.5
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 1.5e-77 294.3 367 48.5
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 4.3e-77 292.7 322 53.7
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 7.4e-77 292.0 359 47.9
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 2.8e-76 290.0 420 45.0
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 3.7e-76 289.7 384 45.8
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 4.8e-76 289.3 396 44.4
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 5.3e-75 285.8 427 45.4
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 1.2e-74 284.6 386 45.6
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 1.5e-74 284.3 387 45.7
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 2.6e-74 283.5 402 44.8
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 1.3e-73 281.2 387 45.5
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 1.7e-73 280.8 343 49.9
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 5.0e-73 279.3 340 50.3
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 6.5e-73 278.9 424 42.0
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 1.1e-72 278.1 217 67.3
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 7.2e-72 275.4 418 43.1
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 1.2e-71 274.6 400 42.5
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 1.6e-71 274.2 416 43.8
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.7e-71 273.5 409 45.2
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 8.7e-70 268.5 425 43.1
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 9.7e-69 265.0 382 42.7
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 2.6e-66 256.9 487 38.4
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 4.5e-66 256.1 395 40.5
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 1.9e-64 250.8 323 47.1
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 2.5e-64 250.4 353 43.9
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 1.2e-63 248.1 401 40.9
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 5.1e-62 242.7 410 38.8
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 3.3e-61 240.0 503 35.2
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 1.1e-59 235.0 395 40.5
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 1.1e-59 235.0 384 38.5
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 7.7e-58 228.8 414 37.4
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 8.8e-54 215.3 382 38.2
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 7.0e-51 205.7 168 64.3
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.6e-50 203.8 407 40.3
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.6e-50 203.8 404 40.3
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 4.5e-50 203.0 409 34.5
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 3.8e-49 199.9 167 62.9
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 5.0e-49 199.5 160 63.8
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 1.8e-46 191.0 276 45.3
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 8.2e-44 182.2 120 76.7
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 7.7e-42 175.6 297 40.1
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 1.7e-41 174.5 399 33.3
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.5e-37 161.4 404 30.9
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.5e-29 134.8 417 27.3
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 7.8e-26 122.5 203 40.9
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 5.6e-24 116.3 216 39.4
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 7.3e-24 115.9 214 37.4
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 2.0e-21 107.8 75 69.3
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 8.3e-20 102.4 282 31.6
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 1.4e-19 101.7 75 64.0
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 1.4e-19 101.7 238 33.6
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 1.4e-19 101.7 268 33.2
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 3.2e-19 100.5 73 69.9
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 3.1e-14 84.0 278 30.9
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 5.2e-14 83.2 75 56.0
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 4.4e-13 80.1 217 29.0
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 1.1e-11 75.5 108 41.7
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.1e-11 73.6 72 55.6
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 9.2e-11 72.4 105 46.7
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 3.5e-10 70.5 46 73.9
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 6.0e-10 69.7 56 62.5
FAN07G1916 Fragaria x ananassa HOM05D006262 ORTHO05D007266 2.3e-09 67.8 45 71.1
CAN.G1343.18 Capsicum annuum HOM05D006262 ORTHO05D007266 4.7e-07 60.1 49 57.1
CAN.G948.4 Capsicum annuum HOM05D001587 ORTHO05D007266 3.1e-06 57.4 42 66.7


User provided reference genes

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