Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 5.5e-113 411.0 209 100.0
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 2.2e-53 213.0 198 65.7
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.3e-50 203.8 127 79.5
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.3e-50 203.8 137 76.6
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.7e-50 203.4 160 66.9
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.7e-50 203.4 129 80.6
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 5.1e-50 201.8 142 75.4
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 5.1e-50 201.8 145 73.1
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.5e-49 200.3 173 65.9
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.9e-49 199.9 197 58.9
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.9e-49 199.9 177 65.0
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.3e-49 199.1 159 67.9
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 4.3e-49 198.7 153 68.0
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.3e-49 198.0 144 70.8
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 7.3e-49 198.0 165 64.8
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.2e-48 197.2 192 60.4
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 1.2e-48 197.2 159 66.0
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 1.6e-48 196.8 153 69.9
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 2.1e-48 196.4 126 77.8
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 2.1e-48 196.4 118 83.1
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 2.1e-48 196.4 187 58.3
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 3.6e-48 195.7 142 72.5
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.6e-48 195.7 128 76.6
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.6e-48 195.7 128 76.6
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 3.6e-48 195.7 116 84.5
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 4.7e-48 195.3 129 76.0
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 4.7e-48 195.3 159 66.7
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 4.7e-48 195.3 141 73.8
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.2e-48 194.9 192 59.9
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 6.2e-48 194.9 177 60.5
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 8.1e-48 194.5 185 60.0
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.1e-47 194.1 135 74.8
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.4e-47 193.7 156 67.3
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 1.4e-47 193.7 131 71.8
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 1.8e-47 193.4 192 56.8
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.8e-47 193.4 156 68.6
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.8e-47 193.4 153 66.0
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.4e-47 193.0 170 60.6
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 2.4e-47 193.0 153 66.0
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 2.4e-47 193.0 129 75.2
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 2.4e-47 193.0 170 63.5
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 2.4e-47 193.0 122 79.5
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.1e-47 192.6 128 75.8
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.1e-47 192.6 128 75.8
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.1e-47 192.6 128 75.8
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 3.1e-47 192.6 188 58.5
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 4.0e-47 192.2 129 76.7
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 5.2e-47 191.8 183 57.4
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 6.8e-47 191.4 124 79.0
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 8.9e-47 191.0 168 62.5
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 8.9e-47 191.0 141 69.5
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 8.9e-47 191.0 156 67.9
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 8.9e-47 191.0 148 67.6
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 1.2e-46 190.7 119 80.7
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.5e-46 190.3 127 76.4
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.5e-46 190.3 146 66.4
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.0e-46 189.9 145 66.9
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 2.0e-46 189.9 174 60.9
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 2.0e-46 189.9 169 61.5
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 2.6e-46 189.5 141 70.2
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 3.4e-46 189.1 185 54.1
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 4.4e-46 188.7 195 56.9
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 4.4e-46 188.7 182 55.5
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 5.8e-46 188.3 153 64.7
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 5.8e-46 188.3 140 68.6
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 7.6e-46 188.0 172 60.5
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 7.6e-46 188.0 190 58.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 7.6e-46 188.0 143 67.1
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 7.6e-46 188.0 177 59.3
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 9.9e-46 187.6 141 68.8
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 9.9e-46 187.6 129 73.6
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.3e-45 187.2 184 55.4
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 1.3e-45 187.2 190 58.4
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.3e-45 187.2 190 58.4
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 2.2e-45 186.4 123 73.2
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 2.2e-45 186.4 141 69.5
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 2.2e-45 186.4 141 69.5
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.2e-45 186.4 177 59.3
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 2.9e-45 186.0 164 61.0
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 2.9e-45 186.0 164 59.8
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.9e-45 186.0 166 62.7
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 2.9e-45 186.0 175 59.4
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 3.8e-45 185.7 185 56.2
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.8e-45 185.7 178 58.4
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 3.8e-45 185.7 178 58.4
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 3.8e-45 185.7 119 75.6
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.8e-45 185.7 173 57.2
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 4.9e-45 185.3 138 72.5
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 4.9e-45 185.3 143 67.8
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 6.4e-45 184.9 150 63.3
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 8.4e-45 184.5 129 72.9
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 1.1e-44 184.1 171 59.1
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.4e-44 183.7 184 54.3
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.4e-44 183.7 178 58.4
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.4e-44 183.7 188 55.3
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.9e-44 183.3 123 72.4
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 1.9e-44 183.3 162 63.0
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 1.9e-44 183.3 188 55.3
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 2.4e-44 183.0 123 72.4
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 2.4e-44 183.0 141 67.4
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 2.4e-44 183.0 128 70.3
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 2.4e-44 183.0 192 56.8
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 3.2e-44 182.6 115 79.1
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 4.2e-44 182.2 171 60.2
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 4.2e-44 182.2 175 61.1
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 5.4e-44 181.8 193 55.4
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 7.1e-44 181.4 119 72.3
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 7.1e-44 181.4 191 56.5
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.2e-43 180.6 163 61.3
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.6e-43 180.3 141 62.4
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 2.1e-43 179.9 191 54.5
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 3.5e-43 179.1 125 71.2
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 4.6e-43 178.7 199 50.8
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.3e-42 177.2 200 51.5
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 2.3e-42 176.4 118 76.3
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 5.1e-42 175.3 162 59.9
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 6.6e-42 174.9 120 71.7
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 2.8e-40 169.5 109 76.1
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 4.8e-40 168.7 171 55.6
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.2e-40 168.3 164 56.1
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 1.1e-39 167.5 113 74.3
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 1.2e-38 164.1 96 82.3
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.2e-38 164.1 168 54.8
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.5e-38 163.7 99 82.8
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.5e-38 163.7 107 73.8
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 4.4e-38 162.2 96 84.4
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.7e-37 160.2 117 66.7
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.2e-37 159.8 170 54.1
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.9e-37 159.5 115 65.2
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.8e-37 159.1 115 61.7
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 6.4e-37 158.3 190 50.5
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 2.4e-36 156.4 97 78.4
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 2.4e-36 156.4 130 60.8
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 5.4e-36 155.2 114 64.0
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 7.1e-36 154.8 96 79.2
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 6.0e-35 151.8 175 52.6
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 7.8e-35 151.4 113 69.0
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.7e-34 150.2 113 66.4
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.7e-34 150.2 167 50.9
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 2.3e-34 149.8 96 75.0
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.1e-33 147.5 185 51.4
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 4.8e-32 142.1 113 65.5
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.0e-31 139.0 160 53.1
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.3e-31 138.7 159 53.5
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 4.6e-27 125.6 106 54.7
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 1.8e-26 123.6 109 52.3
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.3e-25 119.0 190 42.6
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.3e-24 117.5 100 60.0
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 1.1e-23 114.4 152 44.7
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 3.1e-23 112.8 64 85.9
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 4.0e-23 112.5 64 84.4
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.2e-22 110.9 72 77.8
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 2.0e-22 110.2 98 57.1
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 5.8e-22 108.6 65 75.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.9e-21 106.3 114 43.9
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 8.4e-21 104.8 64 79.7
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 2.3e-18 96.7 64 76.6
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 9.6e-17 91.3 70 60.0
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.7e-16 89.4 99 40.4
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-15 87.4 52 82.7
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 1.4e-07 60.8 69 47.8
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-07 60.8 35 88.6
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 6.9e-07 58.5 32 84.4
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 6.9e-07 58.5 69 49.3
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-05 54.7 45 62.2
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-05 54.7 45 62.2


User provided reference genes

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