Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0007600 Simmondsia chinensis HOM05D007257 ORTHO05D008924 3.2e-62 241.5 116 100.0
Thecc.05G001300 Theobroma cacao HOM05D007257 ORTHO05D008924 4.4e-19 98.2 119 48.7
EL10Ac3g06173 Beta vulgaris HOM05D007257 ORTHO05D008924 3.7e-18 95.1 129 47.3
Atru.chr3.1975 Acer truncatum HOM05D007257 ORTHO05D008924 1.6e-16 89.7 114 44.7
Haze_11125 Corylus avellana HOM05D007257 ORTHO05D008924 2.7e-16 89.0 123 45.5
QL10p064610 Quercus lobata HOM05D007257 ORTHO05D008924 2.7e-16 89.0 119 42.0
QL10p065732 Quercus lobata HOM05D007257 ORTHO05D008924 2.7e-16 89.0 119 42.0
Ciclev10022922m.g Citrus clementina HOM05D007257 ORTHO05D008924 4.5e-16 88.2 120 44.2
PGR042G0806 Punica granatum HOM05D007257 ORTHO05D008924 1.0e-15 87.0 127 42.5
Ah.07g203290 Amaranthus hybridus HOM05D007257 ORTHO05D008924 5.0e-15 84.7 125 48.0
CiPaw.01G202100 Carya illinoinensis HOM05D007257 ORTHO05D008924 6.5e-15 84.3 124 41.9
AUR62002488 Chenopodium quinoa HOM05D007257 ORTHO05D008924 5.5e-14 81.3 113 42.5
Medtr3g098390 Medicago truncatula HOM05D007257 ORTHO05D008924 1.2e-13 80.1 114 43.0
Migut.G00917 Erythranthe guttata HOM05D007257 ORTHO05D008924 1.6e-13 79.7 116 41.4
Cfa008520 Carpinus fangiana HOM05D007257 ORTHO05D008924 4.7e-13 78.2 123 42.3
COL.COLO4_14410 Corchorus olitorius HOM05D007257 ORTHO05D008924 4.7e-13 78.2 123 40.7
Lj1g0006483 Lotus japonicus HOM05D007257 ORTHO05D008924 3.0e-12 75.5 120 43.3
Manes.01G009800 Manihot esculenta HOM05D007257 ORTHO05D008924 8.8e-12 73.9 119 41.2
Gohir.D09G190900 Gossypium hirsutum HOM05D007257 ORTHO05D008924 1.2e-11 73.6 114 36.0
Gorai.006G213700 Gossypium raimondii HOM05D007257 ORTHO05D008924 1.2e-11 73.6 114 36.0
Gohir.A09G196300 Gossypium hirsutum HOM05D007257 ORTHO05D008924 1.5e-11 73.2 113 35.4
Nitab4.5_0000160g0050 Nicotiana tabacum HOM05D007257 ORTHO05D008924 2.0e-11 72.8 117 44.4
Nn1g09433 Nelumbo nucifera HOM05D007257 ORTHO05D008924 3.4e-11 72.0 124 40.3
TAR365G0873 Trochodendron aralioides HOM05D007257 ORTHO05D008924 3.4e-11 72.0 111 41.4
Glyma.06G162400 Glycine max HOM05D007257 ORTHO05D008924 4.4e-11 71.6 124 39.5
Manes.05G207200 Manihot esculenta HOM05D007257 ORTHO05D008924 4.4e-11 71.6 113 40.7
Nn7g37449 Nelumbo nucifera HOM05D007257 ORTHO05D008924 4.4e-11 71.6 117 42.7
CiPaw.02G125200 Carya illinoinensis HOM05D007257 ORTHO05D008924 7.5e-11 70.9 78 53.8
Psat5g055880 Pisum sativum HOM05D007257 ORTHO05D008924 7.5e-11 70.9 122 41.8
Potri.007G145500 Populus trichocarpa HOM05D007257 ORTHO05D008924 9.8e-11 70.5 110 39.1
Glyma.05G198900 Glycine max HOM05D007257 ORTHO05D008924 1.3e-10 70.1 128 37.5
THA.LOC104827561 Tarenaya hassleriana HOM05D007257 ORTHO05D008924 1.3e-10 70.1 117 37.6
Dinv24749 Davidia involucrata HOM05D007257 ORTHO05D008924 1.7e-10 69.7 95 45.3
Migut.N03023 Erythranthe guttata HOM05D007257 ORTHO05D008924 1.7e-10 69.7 120 43.3
Glyma.04G203100 Glycine max HOM05D007257 ORTHO05D008924 1.7e-10 69.7 122 40.2
Lalb_Chr11g0068971 Lupinus albus HOM05D007257 ORTHO05D008924 2.8e-10 68.9 117 40.2
SGA_v2.0_scaffold25G11017 Striga asiatica HOM05D007257 ORTHO05D008924 2.8e-10 68.9 117 37.6
Dinv33249 Davidia involucrata HOM05D008933 ORTHO05D011098 3.7e-10 68.6 94 45.7
SalBow3G3102 Salvia bowleyana HOM05D007257 ORTHO05D008924 4.8e-10 68.2 127 39.4
TWI15G0669 Tripterygium wilfordii HOM05D007257 ORTHO05D008924 1.8e-09 66.2 126 35.7
Phvul.009G159100 Phaseolus vulgaris HOM05D007257 ORTHO05D008924 2.4e-09 65.9 123 39.8
Sabra07G0115500 Salix brachista HOM05D007257 ORTHO05D008924 4.1e-09 65.1 110 36.4
Sabra17G0006100 Salix brachista HOM05D007257 ORTHO05D008924 4.1e-09 65.1 72 51.4
Sopen12g032450 Solanum pennellii HOM05D007257 ORTHO05D008924 9.1e-09 63.9 127 38.6
TPR.G7792 Trifolium pratense HOM05D007257 ORTHO05D008924 9.1e-09 63.9 114 38.6
Peaxi162Scf00169g00094 Petunia axillaris HOM05D007257 ORTHO05D008924 1.2e-08 63.5 125 35.2
PGSC0003DMG400029271 Solanum tuberosum HOM05D007257 ORTHO05D008924 1.6e-08 63.2 127 37.0
Peaxi162Scf00057g00224 Petunia axillaris HOM05D007257 ORTHO05D008924 2.0e-08 62.8 117 38.5
Eucgr.A00421 Eucalyptus grandis HOM05D007257 ORTHO05D008924 2.7e-08 62.4 124 35.5
Nitab4.5_0001110g0010 Nicotiana tabacum HOM05D007257 ORTHO05D008924 4.5e-08 61.6 126 38.9
Sp4g26100 Schrenkiella parvula HOM05D007257 ORTHO05D008924 4.5e-08 61.6 116 36.2
MELO3C008506.2 Cucumis melo HOM05D007257 ORTHO05D008924 5.9e-08 61.2 122 36.1
CsaV3_2G011240 Cucumis sativus L. HOM05D007257 ORTHO05D008924 7.7e-08 60.8 122 35.2
Actinidia18394 Actinidia chinensis HOM05D008933 ORTHO05D011098 1.3e-07 60.1 72 45.8
Potri.017G002100 Populus trichocarpa HOM05D007257 ORTHO05D008924 1.3e-07 60.1 110 37.3
Lalb_Chr12g0202631 Lupinus albus HOM05D007257 ORTHO05D008924 1.7e-07 59.7 123 34.1
Hma1.2p1_1782F.1_g302120 Hydrangea macrophylla HOM05D007257 ORTHO05D008924 2.3e-07 59.3 77 42.9
Oeu018062.1 Olea europaea HOM05D007257 ORTHO05D008924 2.3e-07 59.3 125 33.6
CANSAT01G1842 Cannabis sativa HOM05D007257 ORTHO05D008924 3.8e-07 58.5 125 36.8
Glyma.08G006200 Glycine max HOM05D007257 ORTHO05D008924 3.8e-07 58.5 127 33.1
vmacro00725 Vaccinium macrocarpon HOM05D007257 ORTHO05D008924 3.8e-07 58.5 131 35.1
Solyc12g017960.1 Solanum lycopersicum HOM05D007257 ORTHO05D008924 6.6e-07 57.8 114 35.1
PGSC0003DMG400020384 Solanum tuberosum HOM05D007257 ORTHO05D008924 6.6e-07 57.8 114 35.1
A05p04160 Brassica napus HOM05D007257 ORTHO05D008924 8.6e-07 57.4 114 33.3
BraA05t19402Z Brassica rapa HOM05D007257 ORTHO05D008924 8.6e-07 57.4 114 33.3
Sp5g03270 Schrenkiella parvula HOM05D007257 ORTHO05D008924 8.6e-07 57.4 122 31.1
BcaC01g05192 Brassica carinata HOM05D007257 ORTHO05D008924 1.5e-06 56.6 114 33.3
Aa31LG1G25680 Aethionema arabicum HOM05D007257 ORTHO05D008924 1.9e-06 56.2 124 32.3
AL5G42000 Arabidopsis lyrata HOM05D007257 ORTHO05D008924 1.9e-06 56.2 126 31.7
BcaB02g08925 Brassica carinata HOM05D007257 ORTHO05D008924 1.9e-06 56.2 116 32.8
CARHR139190 Cardamine hirsuta HOM05D007257 ORTHO05D008924 1.9e-06 56.2 117 35.0
Sed0023616 Sechium edule HOM05D007257 ORTHO05D008924 2.5e-06 55.8 122 35.2
Phvul.002G279900 Phaseolus vulgaris HOM05D007257 ORTHO05D008924 3.3e-06 55.5 115 33.9
Rhsim09G0003000 Rhododendron simsii HOM05D007257 ORTHO05D008924 3.3e-06 55.5 126 36.5
BolC4t22123H Brassica oleracea HOM05D007257 ORTHO05D008924 4.2e-06 55.1 117 33.3
ClCG06G009780 Citrullus lanatus HOM05D007257 ORTHO05D008924 4.2e-06 55.1 124 33.9
BcaC02g12345 Brassica carinata HOM05D007257 ORTHO05D008924 5.5e-06 54.7 117 33.3
C04p04930 Brassica napus HOM05D007257 ORTHO05D008924 7.2e-06 54.3 117 33.3
Carub.0004s2657 Capsella rubella HOM05D007257 ORTHO05D008924 7.2e-06 54.3 114 33.3
Rhsim09G0003300 Rhododendron simsii HOM05D007257 ORTHO05D008924 9.5e-06 53.9 120 31.7
Sopen12g009180 Solanum pennellii HOM05D007257 ORTHO05D008924 9.5e-06 53.9 114 34.2


User provided reference genes

Program Settings