Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.0e-94 350.1 187 100.0
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.7e-68 261.9 150 96.0
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.3e-44 183.7 159 64.8
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.6e-42 176.8 167 64.1
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.6e-39 166.8 112 72.3
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 4.0e-38 162.2 161 59.0
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 9.8e-37 157.5 162 57.4
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 6.4e-36 154.8 161 50.9
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.7e-34 149.4 121 63.6
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.3e-33 147.1 109 63.3
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.9e-33 145.6 106 66.0
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 5.0e-33 145.2 175 48.0
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 4.3e-32 142.1 165 53.9
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.3e-32 142.1 183 49.2
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 5.6e-32 141.7 183 49.7
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 2.8e-31 139.4 105 66.7
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.8e-31 139.4 175 45.7
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 6.2e-31 138.3 175 46.3
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 1.4e-30 137.1 120 56.7
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 1.4e-30 137.1 177 45.8
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 1.8e-30 136.7 179 44.7
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.8e-30 136.7 174 53.4
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 3.1e-30 136.0 106 62.3
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 4.0e-30 135.6 176 46.0
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 1.2e-29 134.0 166 52.4
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 1.5e-29 133.7 178 49.4
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.5e-29 133.7 178 44.4
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.6e-29 132.9 177 45.2
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 7.5e-29 131.3 124 54.0
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 9.8e-29 131.0 101 62.4
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 9.8e-29 131.0 113 60.2
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 9.8e-29 131.0 105 61.0
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.3e-28 130.6 165 51.5
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.2e-28 129.8 114 57.0
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.9e-28 129.4 156 54.5
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 2.9e-28 129.4 125 50.4
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.7e-28 129.0 187 43.3
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 4.9e-28 128.6 101 64.4
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 6.4e-28 128.3 102 58.8
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 8.3e-28 127.9 114 54.4
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 8.3e-28 127.9 156 53.2
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 1.1e-27 127.5 108 57.4
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.1e-27 127.5 114 54.4
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.1e-27 127.5 94 60.6
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.9e-27 126.7 174 48.9
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.9e-27 126.7 102 58.8
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.4e-27 126.3 113 59.3
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.4e-27 126.3 104 58.7
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 2.4e-27 126.3 100 60.0
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.4e-27 126.3 100 60.0
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 2.4e-27 126.3 100 60.0
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 2.4e-27 126.3 106 53.8
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 3.2e-27 125.9 108 56.5
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 3.2e-27 125.9 125 52.0
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 4.1e-27 125.6 94 59.6
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 5.4e-27 125.2 102 57.8
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 5.4e-27 125.2 102 57.8
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 5.4e-27 125.2 102 57.8
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 5.4e-27 125.2 171 50.9
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 7.0e-27 124.8 102 56.9
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 7.0e-27 124.8 113 54.9
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 7.0e-27 124.8 106 58.5
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 7.0e-27 124.8 106 58.5
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-26 124.0 174 44.8
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-26 124.0 174 44.8
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.2e-26 124.0 101 59.4
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.6e-26 123.6 100 58.0
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.6e-26 123.6 187 41.7
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 1.6e-26 123.6 103 59.2
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.0e-26 123.2 100 58.0
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.0e-26 123.2 102 55.9
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 2.0e-26 123.2 125 51.2
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.0e-26 123.2 162 51.9
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 4.6e-26 122.1 102 55.9
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 6.0e-26 121.7 102 56.9
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 6.0e-26 121.7 102 56.9
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 6.0e-26 121.7 102 56.9
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 6.0e-26 121.7 118 53.4
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 6.0e-26 121.7 92 60.9
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 7.8e-26 121.3 102 56.9
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 7.8e-26 121.3 162 45.1
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.3e-25 120.6 126 52.4
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 1.3e-25 120.6 126 52.4
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 1.3e-25 120.6 108 55.6
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 1.7e-25 120.2 117 54.7
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 2.3e-25 119.8 92 60.9
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 3.9e-25 119.0 119 50.4
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 3.9e-25 119.0 162 49.4
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.1e-24 117.5 93 60.2
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 1.5e-24 117.1 90 62.2
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 5.6e-24 115.2 114 50.9
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 3.6e-23 112.5 93 58.1
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 3.6e-23 112.5 93 58.1
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 3.6e-23 112.5 124 50.8
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 3.6e-23 112.5 124 50.8
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 4.7e-23 112.1 165 42.4
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 4.7e-23 112.1 99 55.6
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 4.7e-23 112.1 172 42.4
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 1.1e-22 110.9 93 57.0
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 1.4e-22 110.5 126 47.6
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 3.1e-22 109.4 168 41.7
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 3.1e-22 109.4 93 55.9
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 4.0e-22 109.0 106 50.9
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 4.9e-20 102.1 173 39.9
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.1e-19 100.9 175 38.3
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 5.4e-19 98.6 126 44.4
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.7e-18 96.3 170 38.8
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 7.8e-18 94.7 106 48.1
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 3.0e-17 92.8 81 63.0
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 8.6e-17 91.3 141 40.4
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.8e-15 86.3 129 51.9
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 3.6e-15 85.9 98 45.9
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 4.7e-15 85.5 178 35.4
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 2.0e-13 80.1 83 47.0
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 3.4e-13 79.3 102 39.2
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 3.7e-12 75.9 45 75.6
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 3.7e-12 75.9 75 60.0
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 4.9e-12 75.5 88 40.9
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.4e-11 73.9 59 61.0
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 3.2e-11 72.8 69 47.8
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 1.2e-10 70.9 123 43.9
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.2e-10 70.9 48 68.8
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 1.6e-10 70.5 49 67.3
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 3.5e-10 69.3 69 46.4
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 6.0e-10 68.6 48 66.7
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 6.0e-10 68.6 48 66.7
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.0e-09 67.8 46 67.4
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 1.3e-09 67.4 100 36.0
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 2.3e-09 66.6 48 64.6
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 8.6e-09 64.7 117 41.9
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.1e-08 64.3 104 34.6
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 2.1e-07 60.1 49 57.1
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.8e-07 59.7 62 51.6
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.1e-06 57.8 41 63.4
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 1.4e-06 57.4 87 47.1


User provided reference genes

Program Settings