Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 5.8e-141 504.2 253 100.0
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 7.8e-130 467.2 242 95.9
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.7e-76 290.0 244 60.2
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 5.5e-75 285.0 254 58.3
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.9e-73 278.9 265 54.7
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 5.7e-72 275.0 254 56.3
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.1e-70 269.2 268 53.7
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 1.3e-68 263.8 252 54.8
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 1.7e-68 263.5 251 53.4
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 2.9e-68 262.7 260 53.5
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 8.5e-68 261.2 253 53.0
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 8.5e-68 261.2 267 52.4
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.9e-67 260.0 265 52.8
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 5.5e-67 258.5 249 53.0
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.6e-66 256.9 259 51.7
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 3.6e-66 255.8 250 54.8
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 5.2e-65 251.9 240 55.8
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 6.7e-65 251.5 261 51.0
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 1.5e-64 250.4 263 50.6
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 2.0e-64 250.0 265 52.8
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 2.0e-64 250.0 243 53.9
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.0e-64 250.0 245 54.3
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 2.0e-64 250.0 276 49.3
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.3e-63 247.3 271 50.2
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 7.0e-62 241.5 247 52.2
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 9.1e-62 241.1 270 52.2
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 9.1e-62 241.1 244 52.9
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 5.9e-61 238.4 271 49.8
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 7.7e-61 238.0 257 49.8
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 1.3e-60 237.3 231 51.9
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 1.1e-59 234.2 250 51.2
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 2.5e-59 233.0 242 50.0
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.5e-59 233.0 252 50.8
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 5.5e-59 231.9 249 49.0
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.6e-58 230.3 250 51.6
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 2.7e-58 229.6 253 47.4
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 3.6e-58 229.2 248 51.6
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 4.7e-58 228.8 243 49.8
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 6.1e-58 228.4 251 47.4
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 8.0e-58 228.0 246 49.6
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 1.8e-57 226.9 249 51.0
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 4.0e-57 225.7 233 55.8
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 6.8e-57 224.9 243 48.6
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 6.8e-57 224.9 251 49.0
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 8.8e-57 224.6 244 49.6
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 8.8e-57 224.6 243 48.1
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.2e-56 224.2 242 48.3
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 1.2e-56 224.2 252 49.2
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 1.5e-56 223.8 252 45.2
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.5e-56 223.8 242 49.6
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 2.0e-56 223.4 245 50.2
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 5.7e-56 221.9 265 48.3
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 5.7e-56 221.9 265 48.3
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 7.5e-56 221.5 283 46.6
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 9.8e-56 221.1 242 47.5
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.3e-55 220.7 242 49.2
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 1.7e-55 220.3 248 48.0
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.2e-55 219.9 256 48.0
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 2.2e-55 219.9 252 48.4
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 2.8e-55 219.5 243 50.6
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 4.8e-55 218.8 242 47.9
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 8.3e-55 218.0 244 48.0
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 8.3e-55 218.0 244 47.5
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 8.3e-55 218.0 254 48.4
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.8e-54 216.9 242 47.1
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.8e-54 216.9 250 46.8
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.8e-54 216.9 244 51.6
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 3.1e-54 216.1 242 48.8
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.1e-54 215.7 236 47.9
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 4.1e-54 215.7 236 47.9
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 5.4e-54 215.3 243 47.7
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.0e-53 213.4 249 50.6
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.0e-53 213.4 249 50.6
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 2.7e-53 213.0 228 50.0
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 4.5e-53 212.2 244 48.4
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 7.7e-53 211.5 243 47.3
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 7.7e-53 211.5 246 47.6
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 7.7e-53 211.5 250 46.8
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.0e-52 211.1 220 52.3
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.7e-52 210.3 244 46.7
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.7e-52 210.3 239 47.3
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 1.7e-52 210.3 249 45.8
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.7e-52 210.3 249 48.6
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 1.7e-52 210.3 247 47.4
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 2.9e-52 209.5 258 46.9
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 6.5e-52 208.4 235 48.1
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 2.5e-51 206.5 248 46.4
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 3.3e-51 206.1 239 45.6
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 4.2e-51 205.7 243 46.9
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 5.5e-51 205.3 248 45.6
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 7.2e-51 204.9 246 45.9
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 7.2e-51 204.9 251 44.6
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.6e-50 203.8 227 53.3
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 2.1e-50 203.4 248 43.1
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.1e-50 203.4 251 46.2
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.8e-50 203.0 243 43.6
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 2.8e-50 203.0 254 44.5
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 3.6e-50 202.6 239 47.3
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 3.6e-50 202.6 229 46.7
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 4.7e-50 202.2 230 50.0
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 6.1e-50 201.8 233 49.4
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 8.0e-50 201.4 242 47.1
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.0e-49 201.1 229 46.3
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 1.4e-49 200.7 228 48.2
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.4e-49 200.7 244 47.5
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 4.4e-48 195.7 246 45.1
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 7.5e-48 194.9 252 45.2
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.5e-43 180.6 242 42.1
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 9.5e-43 177.9 249 43.4
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 4.7e-42 175.6 229 46.3
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.4e-41 174.1 243 43.6
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 2.0e-40 170.2 243 41.2
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 2.2e-39 166.8 227 44.9
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.1e-38 164.5 161 54.0
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 2.4e-38 163.3 240 40.8
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 5.4e-38 162.2 242 39.3
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 9.2e-38 161.4 247 37.7
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.1e-35 154.5 208 42.8
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.9e-35 153.7 183 45.9
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.6e-35 152.1 165 48.5
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 9.5e-35 151.4 195 45.6
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.1e-34 150.2 183 45.4
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 2.8e-34 149.8 243 40.7
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 6.2e-34 148.7 183 44.8
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.9e-33 144.8 183 44.8
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.2e-32 144.4 183 43.7
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.2e-32 144.4 183 43.7
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.2e-32 144.4 183 43.7
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 4.6e-29 132.5 142 49.3
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 3.9e-28 129.4 296 32.1
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 2.3e-25 120.2 216 38.0
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 1.1e-22 111.3 223 31.4
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.4e-22 110.2 157 38.2
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.7e-21 106.7 187 36.9
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 6.0e-21 105.5 102 53.9
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.7e-20 104.0 170 38.2
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 8.6e-20 101.7 132 43.9
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 1.9e-19 100.5 146 41.8
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 7.3e-19 98.6 95 49.5
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 2.1e-18 97.1 120 42.5
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 7.1e-14 82.0 47 85.1
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-13 81.3 144 30.6
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 8.7e-12 75.1 375 21.1
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 7.3e-11 72.0 110 44.5
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.2e-10 71.2 45 71.1
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.7e-07 60.8 83 44.6
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.9e-07 60.1 45 64.4


User provided reference genes

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