Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0007300 Simmondsia chinensis HOM05D006842 ORTHO05D008908 8.3e-51 203.4 100 100.0
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 3.0e-24 115.2 99 58.6
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.1e-18 96.7 87 51.7
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 6.0e-17 90.9 87 49.4
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 6.0e-17 90.9 87 49.4
MD00G1202300 Malus domestica HOM05D007570 ORTHO05D009365 3.7e-14 81.6 73 57.5
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 1.7e-11 72.8 94 41.5
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 2.2e-11 72.4 78 44.9
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 6.5e-11 70.9 88 39.8
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 1.1e-10 70.1 91 38.5
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 1.4e-10 69.7 32 93.8
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 5.5e-10 67.8 88 37.5
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 1.6e-09 66.2 89 36.0
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 2.7e-09 65.5 89 34.8
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 2.7e-09 65.5 89 34.8
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 6.0e-09 64.3 91 36.3
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 1.0e-08 63.5 89 36.0
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 1.8e-08 62.8 89 34.8
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 1.8e-08 62.8 89 34.8
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 1.8e-08 62.8 88 33.0
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 3.9e-08 61.6 86 34.9
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 5.1e-08 61.2 91 36.3
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 1.1e-07 60.1 91 33.0
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 1.5e-07 59.7 91 35.2
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 1.9e-07 59.3 91 35.2
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 2.5e-07 58.9 91 35.2
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 4.3e-07 58.2 91 35.2
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 4.3e-07 58.2 91 33.0
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 5.7e-07 57.8 91 33.0
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 7.4e-07 57.4 91 35.2
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 7.4e-07 57.4 47 51.1
Aa31LG8G15540 Aethionema arabicum HOM05D000891 ORTHO05D000761 9.6e-07 57.0 98 28.6
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.3e-06 56.6 80 35.0
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 1.3e-06 56.6 77 35.1
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 1.6e-06 56.2 87 33.3
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 1.6e-06 56.2 91 35.2
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 1.6e-06 56.2 91 35.2
Sopen01g043040 Solanum pennellii HOM05D007570 ORTHO05D009365 1.6e-06 56.2 49 46.9
HPP92_020822 Vanilla planifolia HOM05D007570 ORTHO05D009365 1.6e-06 56.2 87 41.4
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 2.1e-06 55.8 91 33.0
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 2.1e-06 55.8 80 35.0
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 2.1e-06 55.8 80 35.0
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 2.1e-06 55.8 91 33.0
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 2.8e-06 55.5 99 33.3
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 2.8e-06 55.5 91 31.9
AT4G36680 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 4.8e-06 54.7 98 27.6
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 4.8e-06 54.7 91 31.9
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 4.8e-06 54.7 91 31.9
CARHR245040 Cardamine hirsuta HOM05D000891 ORTHO05D000761 6.2e-06 54.3 98 28.6
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 6.2e-06 54.3 88 31.8
Aa31LG6G13480 Aethionema arabicum HOM05D000891 ORTHO05D000761 8.2e-06 53.9 98 29.6
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 8.2e-06 53.9 91 31.9


User provided reference genes

Program Settings