Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0007240 Simmondsia chinensis HOM05D000193 ORTHO05D389324 2.2e-35 151.8 76 100.0
Sc13g0007260 Simmondsia chinensis HOM05D000193 ORTHO05D000776 7.0e-26 120.2 75 82.7
EL10Ac3g05579 Beta vulgaris HOM05D000193 ORTHO05D000776 2.5e-15 85.1 75 56.0
AUR62002278 Chenopodium quinoa HOM05D000193 ORTHO05D000776 2.1e-14 82.0 75 53.3
Sc25g0002940 Simmondsia chinensis HOM05D000193 ORTHO05D000776 4.7e-14 80.9 71 54.9
AUR62015418 Chenopodium quinoa HOM05D000193 ORTHO05D000776 6.2e-14 80.5 72 52.8
Nitab4.5_0004579g0010 Nicotiana tabacum HOM05D000193 ORTHO05D000776 1.4e-13 79.3 75 60.0
Hund12002 Selenicereus undatus HOM05D000193 ORTHO05D000776 4.0e-13 77.8 71 56.3
Solyc06g073420.3 Solanum lycopersicum HOM05D000193 ORTHO05D000776 4.0e-13 77.8 75 58.7
Sopen06g029800 Solanum pennellii HOM05D000193 ORTHO05D000776 4.0e-13 77.8 75 58.7
Nitab4.5_0002368g0020 Nicotiana tabacum HOM05D000193 ORTHO05D000776 6.8e-13 77.0 75 58.7
Hma1.2p1_0754F.1_g213110 Hydrangea macrophylla HOM05D000193 ORTHO05D000776 2.0e-12 75.5 75 56.0
Hund03146 Selenicereus undatus HOM05D000193 ORTHO05D000776 2.0e-12 75.5 71 53.5
PGSC0003DMG402027007 Solanum tuberosum HOM05D000193 ORTHO05D000776 2.0e-12 75.5 75 56.0
AUR62002277 Chenopodium quinoa HOM05D000193 ORTHO05D000776 4.4e-12 74.3 71 53.5
DCAR_029919 Daucus carota HOM05D000193 ORTHO05D000776 9.9e-12 73.2 72 55.6
Prupe.1G189900 Prunus persica HOM05D000193 ORTHO05D000776 9.9e-12 73.2 75 54.7
TWI38G0806 Tripterygium wilfordii HOM05D000193 ORTHO05D000776 9.9e-12 73.2 75 56.0
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 9.9e-12 73.2 75 53.3
CSS0044066 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000776 1.3e-11 72.8 75 52.0
MBI11_g35021_MAGBIO Magnolia biondii HOM05D000193 ORTHO05D000776 1.3e-11 72.8 74 50.0
Thecc.04G184400 Theobroma cacao HOM05D000193 ORTHO05D000776 1.3e-11 72.8 75 53.3
TAR636G0197 Trochodendron aralioides HOM05D000193 ORTHO05D000776 1.3e-11 72.8 75 57.3
HPP92_005521 Vanilla planifolia HOM05D003338 ORTHO05D000776 1.3e-11 72.8 75 56.0
HPP92_005587 Vanilla planifolia HOM05D000193 ORTHO05D000776 1.3e-11 72.8 75 56.0
CAN.G65.184 Capsicum annuum HOM05D000193 ORTHO05D000776 2.2e-11 72.0 82 53.7
HanXRQChr02g0058031 Helianthus annuus HOM05D000193 ORTHO05D000776 2.9e-11 71.6 75 50.7
Lj6C59G4 Lonicera japonica HOM05D000193 ORTHO05D000776 2.9e-11 71.6 75 56.0
Cc01_g04440 Coffea canephora HOM05D000193 ORTHO05D000776 3.8e-11 71.2 75 53.3
Duzib151G0871 Durio zibethinus HOM05D000193 ORTHO05D000776 3.8e-11 71.2 75 52.0
DCAR_005509 Daucus carota HOM05D000193 ORTHO05D000776 4.9e-11 70.9 76 51.3
Dinv22718 Davidia involucrata HOM05D000193 ORTHO05D000776 4.9e-11 70.9 75 52.0
PSO017G6830 Papaver somniferum HOM05D000193 ORTHO05D000776 6.4e-11 70.5 75 53.3
Peaxi162Scf00375g00619 Petunia axillaris HOM05D000193 ORTHO05D000776 6.4e-11 70.5 75 50.7
ECA233G6091 Erigeron canadensis HOM05D000193 ORTHO05D000776 8.4e-11 70.1 76 48.7
Duzib212G0700 Durio zibethinus HOM05D000193 ORTHO05D000776 1.1e-10 69.7 75 50.7
Gohir.A10G134300 Gossypium hirsutum HOM05D000193 ORTHO05D000776 1.1e-10 69.7 75 50.7
Lsat_1_v5_gn_6_55321 Lactuca sativa HOM05D000193 ORTHO05D000776 1.1e-10 69.7 75 49.3
Sabra07G0102900 Salix brachista HOM05D000193 ORTHO05D000776 1.1e-10 69.7 75 50.7
GSVIVG01010741001 Vitis vinifera HOM05D000193 ORTHO05D000776 1.1e-10 69.7 75 53.3
Actinidia35967 Actinidia chinensis HOM05D000193 ORTHO05D000776 1.4e-10 69.3 75 52.0
COL.COLO4_14424 Corchorus olitorius HOM05D000193 ORTHO05D000776 1.4e-10 69.3 75 50.7
Dinv44205 Davidia involucrata HOM05D000193 ORTHO05D000776 1.4e-10 69.3 66 56.1
Migut.G01036 Erythranthe guttata HOM05D000193 ORTHO05D000776 1.4e-10 69.3 72 52.8
Gohir.D10G132200 Gossypium hirsutum HOM05D000193 ORTHO05D000776 1.4e-10 69.3 75 50.7
Lsat_1_v5_gn_1_71701 Lactuca sativa HOM05D000193 ORTHO05D000776 1.4e-10 69.3 75 49.3
Thecc.05G003700 Theobroma cacao HOM05D000193 ORTHO05D000776 1.4e-10 69.3 75 50.7
CARHR138410 Cardamine hirsuta HOM05D000193 ORTHO05D000776 1.9e-10 68.9 75 53.3
PSO675G0859 Papaver somniferum HOM05D000193 ORTHO05D000776 1.9e-10 68.9 75 52.0
Potri.007G126800 Populus trichocarpa HOM05D000193 ORTHO05D000776 1.9e-10 68.9 75 49.3
SalBow3G0922 Salvia bowleyana HOM05D000193 ORTHO05D000776 1.9e-10 68.9 72 51.4
Aa31LG1G25090 Aethionema arabicum HOM05D000193 ORTHO05D000776 2.4e-10 68.6 75 53.3
ClCG07G015260 Citrullus lanatus HOM05D000193 ORTHO05D000776 2.4e-10 68.6 75 52.0
Ciclev10020116m.g Citrus clementina HOM05D000193 ORTHO05D000776 2.4e-10 68.6 75 53.3
Nn1g09829 Nelumbo nucifera HOM05D000193 ORTHO05D000776 2.4e-10 68.6 75 49.3
vmacro00608 Vaccinium macrocarpon HOM05D000193 ORTHO05D000776 3.2e-10 68.2 75 52.0
Ah.13g072950 Amaranthus hybridus HOM05D000193 ORTHO05D000776 4.1e-10 67.8 59 61.0
MD04G1039400 Malus domestica HOM05D000193 ORTHO05D000776 4.1e-10 67.8 75 53.3
Manes.11G117700 Manihot esculenta HOM05D000193 ORTHO05D000776 4.1e-10 67.8 75 52.0
THA.LOC104802306 Tarenaya hassleriana HOM05D000193 ORTHO05D000776 5.4e-10 67.4 73 50.7
MSTRG.9775 Avicennia marina HOM05D000193 ORTHO05D000776 9.2e-10 66.6 75 53.3
Oeu029570.1 Olea europaea HOM05D000193 ORTHO05D000776 9.2e-10 66.6 75 49.3
Sabra17G0020500 Salix brachista HOM05D000193 ORTHO05D000776 9.2e-10 66.6 75 48.0
Aa31LG10G13710 Aethionema arabicum HOM05D000193 ORTHO05D000776 1.2e-09 66.2 75 50.7
Cpa.g.sc71.13 Carica papaya HOM05D000193 ORTHO05D000776 1.2e-09 66.2 75 49.3
FAN17G1728 Fragaria x ananassa HOM05D000193 ORTHO05D000776 1.2e-09 66.2 75 50.7
FvH4_4g11240 Fragaria vesca HOM05D000193 ORTHO05D000776 1.6e-09 65.9 75 50.7
FAN07G0016 Fragaria x ananassa HOM05D000193 ORTHO05D000776 1.6e-09 65.9 75 50.7
FAN22G0268 Fragaria x ananassa HOM05D000193 ORTHO05D000776 1.6e-09 65.9 75 50.7
RcHm_v2.0_Chr4g0407331 Rosa chinensis HOM05D000193 ORTHO05D000776 1.6e-09 65.9 75 49.3
Rhsim09G0029500 Rhododendron simsii HOM05D000193 ORTHO05D000776 2.1e-09 65.5 75 50.7
Aqoxy2G04106 Aquilegia oxysepala HOM05D000193 ORTHO05D000776 2.7e-09 65.1 74 48.6
CsaV3_4G002850 Cucumis sativus L. HOM05D000193 ORTHO05D000776 2.7e-09 65.1 75 49.3
Potri.017G032200 Populus trichocarpa HOM05D000193 ORTHO05D000776 3.5e-09 64.7 75 45.3
PGR142G1837 Punica granatum HOM05D000193 ORTHO05D000776 3.5e-09 64.7 75 50.7
QL10p048207 Quercus lobata HOM05D000193 ORTHO05D000776 3.5e-09 64.7 75 45.3
BolC4t22073H Brassica oleracea HOM05D000193 ORTHO05D000776 4.6e-09 64.3 75 52.0
Eucgr.H00389 Eucalyptus grandis HOM05D000193 ORTHO05D000776 4.6e-09 64.3 75 50.7
Thhalv10001407m.g Eutrema salsugineum HOM05D000193 ORTHO05D000776 4.6e-09 64.3 75 50.7
AL4G42010 Arabidopsis lyrata HOM05D000193 ORTHO05D000776 6.0e-09 63.9 75 50.7
AT2G43330 Arabidopsis thaliana HOM05D000193 ORTHO05D000776 6.0e-09 63.9 75 50.7
MELO3C017757.2 Cucumis melo HOM05D000193 ORTHO05D000776 6.0e-09 63.9 75 50.7
Sp4g25430 Schrenkiella parvula HOM05D000193 ORTHO05D000776 6.0e-09 63.9 75 50.7
A05p03710 Brassica napus HOM05D000193 ORTHO05D000776 7.8e-09 63.5 75 50.7
Atru.chr3.1547 Acer truncatum HOM05D000193 ORTHO05D000776 1.0e-08 63.2 72 50.0
BraA05t19358Z Brassica rapa HOM05D000193 ORTHO05D000776 1.0e-08 63.2 75 49.3
CANSAT78G1756 Cannabis sativa HOM05D000193 ORTHO05D000776 1.3e-08 62.8 75 46.7
Lsat_1_v5_gn_2_51240 Lactuca sativa HOM05D000193 ORTHO05D000776 1.3e-08 62.8 75 46.7
Sed0019214 Sechium edule HOM05D000193 ORTHO05D000776 1.7e-08 62.4 75 48.0
arahy.Tifrunner.gnm1.ann1.6X8MEN Arachis hypogaea HOM05D000193 ORTHO05D000776 2.3e-08 62.0 75 49.3
arahy.Tifrunner.gnm1.ann1.Z693L0 Arachis hypogaea HOM05D000193 ORTHO05D000776 2.3e-08 62.0 75 50.7
C04p04400 Brassica napus HOM05D000193 ORTHO05D000776 2.3e-08 62.0 75 50.7
CiPaw.01G102000 Carya illinoinensis HOM05D000193 ORTHO05D000776 2.3e-08 62.0 75 48.0
Lj5g0019464 Lotus japonicus HOM05D000193 ORTHO05D000776 2.3e-08 62.0 76 46.1
arahy.Tifrunner.gnm1.ann1.3K4XHR Arachis hypogaea HOM05D000193 ORTHO05D000776 5.1e-08 60.8 75 49.3
arahy.Tifrunner.gnm1.ann1.7QJ4D4 Arachis hypogaea HOM05D000193 ORTHO05D000776 5.1e-08 60.8 75 49.3
arahy.Tifrunner.gnm1.ann1.G57M3Z Arachis hypogaea HOM05D000193 ORTHO05D000776 5.1e-08 60.8 75 49.3
arahy.Tifrunner.gnm1.ann1.R1XQNG Arachis hypogaea HOM05D000193 ORTHO05D000776 5.1e-08 60.8 75 49.3
arahy.Tifrunner.gnm1.ann1.STV9UK Arachis hypogaea HOM05D000193 ORTHO05D000776 5.1e-08 60.8 75 49.3
arahy.Tifrunner.gnm1.ann1.HLA3Z5 Arachis hypogaea HOM05D000193 ORTHO05D000776 6.6e-08 60.5 75 49.3
arahy.Tifrunner.gnm1.ann1.YS4IQ1 Arachis hypogaea HOM05D000193 ORTHO05D000776 6.6e-08 60.5 76 47.4
A04p32670 Brassica napus HOM05D000193 ORTHO05D000776 6.6e-08 60.5 75 48.0
BraA04t18730Z Brassica rapa HOM05D000193 ORTHO05D000776 6.6e-08 60.5 75 48.0
arahy.Tifrunner.gnm1.ann1.L3BHYJ Arachis hypogaea HOM05D000193 ORTHO05D000776 8.7e-08 60.1 76 46.1
arahy.Tifrunner.gnm1.ann1.UW4HNH Arachis hypogaea HOM05D000193 ORTHO05D000776 8.7e-08 60.1 76 46.1
Hma1.2p1_3339F.1_g335370 Hydrangea macrophylla HOM05D000193 ORTHO05D000776 8.7e-08 60.1 60 55.0
arahy.Tifrunner.gnm1.ann1.RXCH8B Arachis hypogaea HOM05D000193 ORTHO05D000776 1.1e-07 59.7 73 49.3
SGA_v2.0_scaffold17G08064 Striga asiatica HOM05D000193 ORTHO05D000776 1.1e-07 59.7 50 52.0
ATR0743G234 Amborella trichopoda HOM05D000193 ORTHO05D000776 1.5e-07 59.3 75 49.3
arahy.Tifrunner.gnm1.ann1.MN5499 Arachis hypogaea HOM05D000193 ORTHO05D000776 1.5e-07 59.3 76 46.1
Carub.0004s2579 Capsella rubella HOM05D000193 ORTHO05D000776 1.5e-07 59.3 75 48.0
Glyma.20G246200 Glycine max HOM05D000193 ORTHO05D000776 1.5e-07 59.3 75 44.0
TPR.G8902 Trifolium pratense HOM05D000193 ORTHO05D000776 1.5e-07 59.3 76 46.1
Zm00001eb425560 Zea mays HOM05D000193 ORTHO05D000776 1.5e-07 59.3 75 48.0
arahy.Tifrunner.gnm1.ann1.8X50TJ Arachis hypogaea HOM05D000193 ORTHO05D000776 1.9e-07 58.9 75 50.7
arahy.Tifrunner.gnm1.ann1.CG9ZAE Arachis hypogaea HOM05D000193 ORTHO05D000776 1.9e-07 58.9 75 48.0
arahy.Tifrunner.gnm1.ann1.DW67WW Arachis hypogaea HOM05D000193 ORTHO05D000776 1.9e-07 58.9 75 50.7
arahy.Tifrunner.gnm1.ann1.FEWQ0V Arachis hypogaea HOM05D000193 ORTHO05D000776 1.9e-07 58.9 75 50.7
arahy.Tifrunner.gnm1.ann1.N2L9YF Arachis hypogaea HOM05D000193 ORTHO05D000776 1.9e-07 58.9 75 50.7
Lalb_Chr02g0144371 Lupinus albus HOM05D000193 ORTHO05D000776 1.9e-07 58.9 75 45.3
Psat6g242960 Pisum sativum HOM05D000193 ORTHO05D000776 1.9e-07 58.9 76 43.4
CDE08G0475 Ceratophyllum demersum HOM05D000193 ORTHO05D000776 2.5e-07 58.5 74 44.6
Phvul.008G002000 Phaseolus vulgaris HOM05D000193 ORTHO05D000776 2.5e-07 58.5 76 42.1
TPR.G8884 Trifolium pratense HOM05D000193 ORTHO05D000776 2.5e-07 58.5 75 48.0
C04p70360 Brassica napus HOM05D000193 ORTHO05D000776 3.3e-07 58.2 75 46.7
BolC4t28539H Brassica oleracea HOM05D000193 ORTHO05D000776 3.3e-07 58.2 75 46.7
BcaC02g07188 Brassica carinata HOM05D000193 ORTHO05D000776 4.3e-07 57.8 75 46.7
Ca_22464_v3 Cicer arietinum L. HOM05D000193 ORTHO05D000776 4.3e-07 57.8 75 48.0
Hund12003 Selenicereus undatus HOM05D000193 ORTHO05D000776 4.3e-07 57.8 62 54.8
arahy.Tifrunner.gnm1.ann1.ILU6JP Arachis hypogaea HOM05D000193 ORTHO05D000776 5.6e-07 57.4 73 47.9
Ca_16403_v3 Cicer arietinum L. HOM05D000193 ORTHO05D000776 5.6e-07 57.4 75 44.0
HanXRQChr14g0434911 Helianthus annuus HOM05D000193 ORTHO05D000776 5.6e-07 57.4 75 44.0
ECA238G2756 Erigeron canadensis HOM05D000193 ORTHO05D000776 7.3e-07 57.0 75 42.7
Medtr1g116660 Medicago truncatula HOM05D000193 ORTHO05D000776 7.3e-07 57.0 76 43.4
Os04g0491700 Oryza sativa ssp. japonica HOM05D000193 ORTHO05D000776 7.3e-07 57.0 75 45.3
AUR62015420 Chenopodium quinoa HOM05D000193 ORTHO05D000776 9.6e-07 56.6 56 50.0
Glyma.08G361200 Glycine max HOM05D000193 ORTHO05D000776 1.2e-06 56.2 76 40.8
Psat6g142800 Pisum sativum HOM05D000193 ORTHO05D000776 1.2e-06 56.2 72 43.1
SEGI_00690 Sequoiadendron giganteum HOM05D000193 ORTHO05D000776 1.2e-06 56.2 76 42.1
TPR.G19196 Trifolium pratense HOM05D000193 ORTHO05D000776 1.2e-06 56.2 75 46.7
VMungo1383G2584 Vigna mungo HOM05D000193 ORTHO05D000776 1.2e-06 56.2 76 42.1
arahy.Tifrunner.gnm1.ann1.I2CNAA Arachis hypogaea HOM05D000193 ORTHO05D000776 1.6e-06 55.8 75 48.0
arahy.Tifrunner.gnm1.ann1.P171YK Arachis hypogaea HOM05D000193 ORTHO05D000776 1.6e-06 55.8 75 49.3
TPR.G8901 Trifolium pratense HOM05D000193 ORTHO05D000776 1.6e-06 55.8 72 47.2
Phvul.007G003700 Phaseolus vulgaris HOM05D000193 ORTHO05D000776 2.1e-06 55.5 75 42.7
RcHm_v2.0_Chr0c40g0503381 Rosa chinensis HOM05D000193 ORTHO05D000776 2.1e-06 55.5 93 40.9
TPR.G15616 Trifolium pratense HOM05D000193 ORTHO05D000776 2.1e-06 55.5 76 43.4
VMungo0720G0530 Vigna mungo HOM05D000193 ORTHO05D000776 2.1e-06 55.5 75 42.7
arahy.Tifrunner.gnm1.ann1.BP6B37 Arachis hypogaea HOM05D000193 ORTHO05D000776 2.8e-06 55.1 75 41.3
Gorai.011G145900 Gossypium raimondii HOM05D000193 ORTHO05D000776 2.8e-06 55.1 101 37.6
Lj5g0023995 Lotus japonicus HOM05D000193 ORTHO05D000776 2.8e-06 55.1 72 43.1
Psat0s3434g0080 Pisum sativum HOM05D000193 ORTHO05D000776 2.8e-06 55.1 75 44.0
arahy.Tifrunner.gnm1.ann1.RY273S Arachis hypogaea HOM05D000193 ORTHO05D000776 3.6e-06 54.7 75 41.3
Medtr7g005910 Medicago truncatula HOM05D000193 ORTHO05D000776 3.6e-06 54.7 76 42.1
SEGI_05161 Sequoiadendron giganteum HOM05D000193 ORTHO05D000776 3.6e-06 54.7 73 42.5
Medtr3g084110 Medicago truncatula HOM05D000193 ORTHO05D000776 4.7e-06 54.3 75 41.3
Lalb_Chr20g0123731 Lupinus albus HOM05D000193 ORTHO05D000776 6.2e-06 53.9 76 42.1
VMungo0720G1955 Vigna mungo HOM05D000193 ORTHO05D000776 8.1e-06 53.5 75 41.3


User provided reference genes

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