Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0006270 Simmondsia chinensis HOM05D000608 ORTHO05D000444 7.2e-81 303.9 159 100.0
Sc13g0006280 Simmondsia chinensis HOM05D000608 ORTHO05D000444 1.1e-31 140.6 180 50.0
Sc19g0003400 Simmondsia chinensis HOM05D000608 ORTHO05D000444 2.1e-19 99.8 180 36.7
Hund03093 Selenicereus undatus HOM05D000608 ORTHO05D000444 1.3e-18 97.1 122 43.4
AUR62035072 Chenopodium quinoa HOM05D000608 ORTHO05D000444 8.7e-18 94.4 160 38.1
Hund11945 Selenicereus undatus HOM05D000608 ORTHO05D000444 3.3e-17 92.4 138 39.1
EL10Ac3g04933 Beta vulgaris HOM05D000608 ORTHO05D000444 6.2e-16 88.2 187 32.6
AUR62016158 Chenopodium quinoa HOM05D000608 ORTHO05D000444 6.9e-15 84.7 186 33.3
Ah.13g072180 Amaranthus hybridus HOM05D000608 ORTHO05D000444 2.0e-14 83.2 167 35.3
Ah.04g155110 Amaranthus hybridus HOM05D000608 ORTHO05D000444 2.4e-12 76.3 58 62.1
TAR633G2761 Trochodendron aralioides HOM05D000608 ORTHO05D000444 1.2e-11 73.9 127 37.0
Haze_01103 Corylus avellana HOM05D000608 ORTHO05D000444 4.6e-11 72.0 71 56.3
QL06p011172 Quercus lobata HOM05D000608 ORTHO05D000444 1.3e-10 70.5 63 58.7
Cfa015470 Carpinus fangiana HOM05D000608 ORTHO05D000444 2.3e-10 69.7 63 58.7
SHI00189 Sapria himalayana HOM05D000608 ORTHO05D000444 2.5e-09 66.2 116 37.1
CiPaw.02G077900 Carya illinoinensis HOM05D000608 ORTHO05D000444 7.3e-09 64.7 50 66.0
Lj6C683G6 Lonicera japonica HOM05D000608 ORTHO05D000444 9.6e-09 64.3 49 61.2
Atru.chr4.2938 Acer truncatum HOM05D000608 ORTHO05D000444 1.6e-08 63.5 49 63.3
Dinv44325 Davidia involucrata HOM05D000608 ORTHO05D000444 1.6e-08 63.5 41 73.2
Actinidia18652 Actinidia chinensis HOM05D000608 ORTHO05D000444 3.6e-08 62.4 44 65.9
TWI73G0398 Tripterygium wilfordii HOM05D000608 ORTHO05D000444 3.6e-08 62.4 75 48.0
Medtr4g120990 Medicago truncatula HOM05D000608 ORTHO05D000444 6.2e-08 61.6 44 65.9
Potri.010G000700 Populus trichocarpa HOM05D000608 ORTHO05D000444 6.2e-08 61.6 42 69.0
PGR031G3314 Punica granatum HOM05D000608 ORTHO05D000444 6.2e-08 61.6 47 63.8
TPR.G16836 Trifolium pratense HOM05D000608 ORTHO05D000444 6.2e-08 61.6 44 65.9
GSVIVG01035053001 Vitis vinifera HOM05D000608 ORTHO05D000444 6.2e-08 61.6 57 57.9
Gohir.D09G063000 Gossypium hirsutum HOM05D000608 ORTHO05D000444 8.1e-08 61.2 57 54.4
Gorai.006G077900 Gossypium raimondii HOM05D000608 ORTHO05D000444 8.1e-08 61.2 57 54.4
Lj1A21G69 Lonicera japonica HOM05D000608 ORTHO05D000444 1.1e-07 60.8 131 33.6
MD13G1160300 Malus domestica HOM05D000608 ORTHO05D000444 1.1e-07 60.8 46 63.0
Prupe.1G126800 Prunus persica HOM05D000608 ORTHO05D000444 1.1e-07 60.8 62 53.2
SalBow8G1979 Salvia bowleyana HOM05D000608 ORTHO05D000444 1.1e-07 60.8 57 56.1
Ca_21463_v3 Cicer arietinum L. HOM05D000608 ORTHO05D000444 1.4e-07 60.5 42 64.3
Duzib151G0429 Durio zibethinus HOM05D000608 ORTHO05D000444 1.4e-07 60.5 130 37.7
MD16G1159600 Malus domestica HOM05D000608 ORTHO05D000444 1.4e-07 60.5 46 63.0
Gohir.A09G064100 Gossypium hirsutum HOM05D000608 ORTHO05D000444 1.8e-07 60.1 42 64.3
Rhsim04G0231500 Rhododendron simsii HOM05D000608 ORTHO05D000444 2.4e-07 59.7 76 43.4
Manes.15G007600 Manihot esculenta HOM05D000608 ORTHO05D000444 3.1e-07 59.3 44 63.6
BcaB07g34143 Brassica carinata HOM05D000608 ORTHO05D000444 4.0e-07 58.9 51 54.9
Phvul.003G110000 Phaseolus vulgaris HOM05D000608 ORTHO05D000444 4.0e-07 58.9 38 73.7
VMungo1215G0064 Vigna mungo HOM05D000608 ORTHO05D000444 4.0e-07 58.9 38 73.7
Glyma.09G040300 Glycine max HOM05D000608 ORTHO05D000444 5.3e-07 58.5 44 63.6
MBI19_g38159_MAGBIO Magnolia biondii HOM05D000608 ORTHO05D000444 5.3e-07 58.5 42 64.3
Nn3g21591 Nelumbo nucifera HOM05D000608 ORTHO05D000444 5.3e-07 58.5 73 46.6
TAR362G1262 Trochodendron aralioides HOM05D000608 ORTHO05D000444 5.3e-07 58.5 62 48.4
CSS0047781 Camellia sinensis var. sinensis HOM05D000608 ORTHO05D000444 6.9e-07 58.2 75 48.0
CDE09G0161 Ceratophyllum demersum HOM05D000608 ORTHO05D000444 6.9e-07 58.2 74 41.9
Ciclev10005076m.g Citrus clementina HOM05D000608 ORTHO05D000444 6.9e-07 58.2 62 53.2
FvH4_4g19180 Fragaria vesca HOM05D000608 ORTHO05D000444 6.9e-07 58.2 50 58.0
FAN12G1924 Fragaria x ananassa HOM05D000608 ORTHO05D000444 6.9e-07 58.2 50 58.0
FAN12G2081 Fragaria x ananassa HOM05D000608 ORTHO05D000444 6.9e-07 58.2 50 58.0
Glyma.07G243400 Glycine max HOM05D000608 ORTHO05D000444 6.9e-07 58.2 38 68.4
Glyma.17G030500 Glycine max HOM05D000608 ORTHO05D000444 6.9e-07 58.2 38 68.4
Manes.03G200700 Manihot esculenta HOM05D000608 ORTHO05D000444 6.9e-07 58.2 42 64.3
Thecc.04G293700 Theobroma cacao HOM05D000608 ORTHO05D000444 6.9e-07 58.2 129 37.2
vmacro08082 Vaccinium macrocarpon HOM05D000608 ORTHO05D000444 6.9e-07 58.2 41 65.9
FAN07G0324 Fragaria x ananassa HOM05D000608 ORTHO05D000444 9.0e-07 57.8 50 58.0
Lalb_Chr13g0298281 Lupinus albus HOM05D000608 ORTHO05D000444 9.0e-07 57.8 43 62.8
Lj4g0017710 Lotus japonicus HOM05D000608 ORTHO05D000444 1.2e-06 57.4 44 65.9
Sabra08G0149900 Salix brachista HOM05D000608 ORTHO05D000444 1.2e-06 57.4 42 61.9
SGA_v2.0_scaffold444G51723 Striga asiatica HOM05D000608 ORTHO05D000444 1.2e-06 57.4 60 53.3
ATR0706G026 Amborella trichopoda HOM05D000608 ORTHO05D000444 1.5e-06 57.0 71 47.9
arahy.Tifrunner.gnm1.ann1.901AMQ Arachis hypogaea HOM05D000608 ORTHO05D000444 1.5e-06 57.0 44 59.1
arahy.Tifrunner.gnm1.ann1.94K4CU Arachis hypogaea HOM05D000608 ORTHO05D000444 1.5e-06 57.0 44 59.1
CARHR182420 Cardamine hirsuta HOM05D000608 ORTHO05D000444 1.5e-06 57.0 43 60.5
CDE08G0882 Ceratophyllum demersum HOM05D000608 ORTHO05D003052 1.5e-06 57.0 81 44.4
Duzib052G0549 Durio zibethinus HOM05D000608 ORTHO05D000444 1.5e-06 57.0 127 37.0
AL8G22840 Arabidopsis lyrata HOM05D000608 ORTHO05D000444 2.0e-06 56.6 43 60.5
AT5G49220 Arabidopsis thaliana HOM05D000608 ORTHO05D000444 2.0e-06 56.6 41 61.0
CsaV3_1G003990 Cucumis sativus L. HOM05D000608 ORTHO05D000444 2.6e-06 56.2 74 40.5
Sp2g19600 Schrenkiella parvula HOM05D000608 ORTHO05D000444 2.6e-06 56.2 43 60.5
BcaC03g17709 Brassica carinata HOM05D000608 ORTHO05D000444 3.4e-06 55.8 59 52.5
Cc03_g01260 Coffea canephora HOM05D000608 ORTHO05D000444 3.4e-06 55.8 41 63.4
RcHm_v2.0_Chr4g0424141 Rosa chinensis HOM05D000608 ORTHO05D000444 3.4e-06 55.8 50 58.0
Sabra10G0000500 Salix brachista HOM05D000608 ORTHO05D000444 3.4e-06 55.8 42 59.5
HPP92_001069 Vanilla planifolia HOM05D000608 ORTHO05D000444 3.4e-06 55.8 42 59.5
BcaNung02591 Brassica carinata HOM05D000608 ORTHO05D000444 4.5e-06 55.5 41 63.4
C07p39780 Brassica napus HOM05D000608 ORTHO05D000444 4.5e-06 55.5 41 63.4
BolC7t44504H Brassica oleracea HOM05D000608 ORTHO05D000444 4.5e-06 55.5 41 63.4
Thhalv10004298m.g Eutrema salsugineum HOM05D000608 ORTHO05D000444 4.5e-06 55.5 68 44.1
Medtr2g035080 Medicago truncatula HOM05D000608 ORTHO05D000444 4.5e-06 55.5 42 66.7
Potri.008G213300 Populus trichocarpa HOM05D000608 ORTHO05D000444 4.5e-06 55.5 176 26.1
Oeu006432.1 Olea europaea HOM05D000608 ORTHO05D000444 5.8e-06 55.1 55 52.7
Solyc01g065560.4 Solanum lycopersicum HOM05D000608 ORTHO05D000444 5.8e-06 55.1 40 65.0
Sopen01g026950 Solanum pennellii HOM05D000608 ORTHO05D000444 5.8e-06 55.1 40 65.0
PGSC0003DMG400025623 Solanum tuberosum HOM05D000608 ORTHO05D000444 5.8e-06 55.1 40 65.0
A02p37960 Brassica napus HOM05D000608 ORTHO05D000444 7.6e-06 54.7 43 62.8
BraA02t08780Z Brassica rapa HOM05D000608 ORTHO05D000444 7.6e-06 54.7 43 62.8
ClCG06G014620 Citrullus lanatus HOM05D000608 ORTHO05D000444 7.6e-06 54.7 51 51.0
Hma1.2p1_0078F.1_g040200 Hydrangea macrophylla HOM05D000608 ORTHO05D000444 7.6e-06 54.7 40 65.0
Cpa.g.sc9.109 Carica papaya HOM05D000608 ORTHO05D000444 9.9e-06 54.3 41 65.9


User provided reference genes

Program Settings