Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.0e-43 179.9 102 100.0
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 9.2e-21 103.6 102 56.9
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.8e-17 92.0 100 47.0
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 8.9e-16 87.0 88 47.7
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.5e-15 86.3 93 48.4
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.6e-15 85.5 85 52.9
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 4.4e-15 84.7 92 55.4
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 4.4e-15 84.7 97 51.5
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.3e-14 83.2 97 47.4
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.3e-14 83.2 103 48.5
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.7e-14 81.6 105 47.6
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 3.7e-14 81.6 87 47.1
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 6.4e-14 80.9 91 45.1
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 6.4e-14 80.9 88 48.9
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 8.3e-14 80.5 87 52.9
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 8.3e-14 80.5 92 52.2
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.1e-13 80.1 89 48.3
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.1e-13 80.1 101 44.6
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 1.8e-13 79.3 97 50.5
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 4.1e-13 78.2 100 45.0
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 4.1e-13 78.2 90 45.6
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 5.4e-13 77.8 91 46.2
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 5.4e-13 77.8 91 45.1
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 7.0e-13 77.4 96 46.9
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 9.2e-13 77.0 84 47.6
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 9.2e-13 77.0 96 45.8
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.2e-12 76.6 85 47.1
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.2e-12 76.6 100 44.0
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.2e-12 76.6 104 43.3
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.2e-12 76.6 98 46.9
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.2e-12 76.6 104 43.3
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.6e-12 76.3 104 44.2
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.6e-12 76.3 85 45.9
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.0e-12 75.9 100 42.0
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 2.0e-12 75.9 89 49.4
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.0e-12 75.9 85 44.7
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.7e-12 75.5 86 44.2
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.5e-12 75.1 102 44.1
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 3.5e-12 75.1 95 45.3
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.5e-12 75.1 98 41.8
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 3.5e-12 75.1 95 48.4
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 6.0e-12 74.3 102 44.1
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 7.8e-12 73.9 105 45.7
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 7.8e-12 73.9 92 50.0
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.0e-11 73.6 92 47.8
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.0e-11 73.6 89 48.3
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.0e-11 73.6 98 45.9
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 1.3e-11 73.2 104 43.3
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.3e-11 73.2 95 43.2
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.3e-11 73.2 88 43.2
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.7e-11 72.8 95 45.3
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.7e-11 72.8 93 48.4
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 2.3e-11 72.4 95 46.3
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.3e-11 72.4 96 45.8
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.3e-11 72.4 89 47.2
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 3.9e-11 71.6 89 48.3
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 3.9e-11 71.6 83 48.2
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 5.0e-11 71.2 91 57.1
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.0e-11 71.2 94 44.7
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.0e-11 71.2 93 44.1
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.6e-11 70.9 94 45.7
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 6.6e-11 70.9 95 45.3
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 8.6e-11 70.5 90 46.7
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 8.6e-11 70.5 83 47.0
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.1e-10 70.1 86 44.2
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.1e-10 70.1 88 46.6
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.1e-10 70.1 83 44.6
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.1e-10 70.1 109 41.3
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.5e-10 69.7 94 44.7
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.5e-10 69.7 93 45.2
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.5e-10 69.7 89 47.2
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.5e-10 69.7 93 45.2
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.9e-10 69.3 88 45.5
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.9e-10 69.3 104 41.3
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 2.5e-10 68.9 102 51.0
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 3.3e-10 68.6 88 43.2
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 3.3e-10 68.6 88 43.2
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.3e-10 68.6 87 46.0
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 4.3e-10 68.2 85 51.8
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 4.3e-10 68.2 86 43.0
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 4.3e-10 68.2 90 42.2
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 4.3e-10 68.2 102 46.1
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.6e-10 67.8 97 41.2
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 5.6e-10 67.8 88 43.2
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 5.6e-10 67.8 88 43.2
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.6e-10 67.8 92 43.5
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.6e-10 67.8 92 43.5
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 5.6e-10 67.8 95 44.2
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 7.3e-10 67.4 97 40.2
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 7.3e-10 67.4 93 45.2
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 9.5e-10 67.0 118 38.1
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 9.5e-10 67.0 102 48.0
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.2e-09 66.6 88 44.3
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.2e-09 66.6 88 44.3
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.2e-09 66.6 96 43.8
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.2e-09 66.6 98 40.8
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.2e-09 66.6 86 51.2
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.6e-09 66.2 95 42.1
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.6e-09 66.2 84 45.2
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.6e-09 66.2 82 45.1
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.6e-09 66.2 82 45.1
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.6e-09 66.2 99 41.4
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.6e-09 66.2 97 48.5
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.1e-09 65.9 94 46.8
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.1e-09 65.9 88 44.3
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.1e-09 65.9 97 51.5
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.1e-09 65.9 97 51.5
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.1e-09 65.9 89 41.6
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.1e-09 65.9 91 44.0
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 2.1e-09 65.9 87 46.0
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 2.8e-09 65.5 86 44.2
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 2.8e-09 65.5 86 44.2
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 2.8e-09 65.5 102 42.2
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.8e-09 65.5 82 56.1
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 3.6e-09 65.1 84 46.4
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.6e-09 65.1 88 44.3
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.6e-09 65.1 86 44.2
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.6e-09 65.1 96 44.8
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.6e-09 65.1 92 46.7
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 6.2e-09 64.3 85 41.2
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.2e-09 64.3 101 37.6
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.2e-09 64.3 92 43.5
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.2e-09 64.3 83 42.2
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.2e-09 64.3 83 42.2
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 8.0e-09 63.9 85 40.0
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 8.0e-09 63.9 94 44.7
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.0e-09 63.9 92 42.4
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 8.0e-09 63.9 86 45.3
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.1e-08 63.5 112 37.5
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.1e-08 63.5 112 37.5
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.3e-08 62.4 89 43.8
HPP92_022626 Vanilla planifolia HOM05D027912 ORTHO05D004461 2.3e-08 62.4 97 42.3
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.1e-08 62.0 102 40.2
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 4.0e-08 61.6 88 40.9
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 5.2e-08 61.2 83 42.2
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 5.2e-08 61.2 78 46.2
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 5.2e-08 61.2 91 39.6
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.8e-08 60.8 92 39.1
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 8.9e-08 60.5 89 44.9
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 8.9e-08 60.5 93 44.1
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.5e-07 59.7 84 44.0
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.5e-07 59.7 86 44.2
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.0e-07 59.3 95 38.9
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.6e-07 58.9 90 43.3
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 2.6e-07 58.9 93 39.8
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 3.4e-07 58.5 85 42.4
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 9.8e-07 57.0 93 41.9
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 9.8e-07 57.0 80 42.5
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 9.8e-07 57.0 82 42.7
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-06 56.6 83 42.2
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.3e-06 56.6 83 42.2
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.3e-06 56.6 85 45.9
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.7e-06 56.2 82 42.7
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 2.2e-06 55.8 86 39.5
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.2e-06 55.8 86 41.9
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 2.9e-06 55.5 86 39.5
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 2.9e-06 55.5 86 39.5
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 2.9e-06 55.5 86 39.5
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 2.9e-06 55.5 86 41.9
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.9e-06 55.5 91 40.7
HPP92_008406 Vanilla planifolia HOM05D027912 ORTHO05D004461 3.7e-06 55.1 93 38.7
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.9e-06 54.7 90 40.0
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 8.3e-06 53.9 80 36.2
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 8.3e-06 53.9 91 40.7
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 8.3e-06 53.9 87 39.1
HPP92_027996 Vanilla planifolia HOM05D027912 ORTHO05D004461 8.3e-06 53.9 93 37.6


User provided reference genes

Program Settings