Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0004850 Simmondsia chinensis HOM05D002369 ORTHO05D002435 3.6e-18 94.0 50 100.0
Hund20657 Selenicereus undatus HOM05D002369 ORTHO05D002435 6.5e-12 73.2 50 82.0
Oeu043467.1 Olea europaea HOM05D002369 ORTHO05D002435 1.9e-11 71.6 45 84.4
CiPaw.01G193600 Carya illinoinensis HOM05D002369 ORTHO05D002435 3.2e-11 70.9 48 77.1
Aa31LG8G9440 Aethionema arabicum HOM05D002369 ORTHO05D002435 4.2e-11 70.5 42 88.1
Actinidia04496 Actinidia chinensis HOM05D002369 ORTHO05D002435 9.4e-11 69.3 46 82.6
Actinidia27516 Actinidia chinensis HOM05D002369 ORTHO05D002435 9.4e-11 69.3 46 82.6
Lj5g0000230 Lotus japonicus HOM05D002369 ORTHO05D002435 1.2e-10 68.9 47 78.7
Medtr1g076580 Medicago truncatula HOM05D002369 ORTHO05D002435 1.2e-10 68.9 43 83.7
Nn1g02504 Nelumbo nucifera HOM05D002369 ORTHO05D002435 1.2e-10 68.9 44 79.5
EL10Ac3g06275 Beta vulgaris HOM05D002369 ORTHO05D002435 1.6e-10 68.6 49 71.4
Cc03_g04470 Coffea canephora HOM05D002369 ORTHO05D002435 1.6e-10 68.6 47 78.7
Medtr1g076640 Medicago truncatula HOM05D002369 ORTHO05D002435 1.6e-10 68.6 48 75.0
Thecc.04G241600 Theobroma cacao HOM05D002369 ORTHO05D002435 1.6e-10 68.6 47 78.7
Actinidia08457 Actinidia chinensis HOM05D002369 ORTHO05D002435 2.1e-10 68.2 45 82.2
Psat6g114080 Pisum sativum HOM05D002369 ORTHO05D002435 2.1e-10 68.2 47 76.6
AUR62029992 Chenopodium quinoa HOM05D000148 ORTHO05D000081 2.7e-10 67.8 49 69.4
Glyma.20G211400 Glycine max HOM05D002369 ORTHO05D002435 2.7e-10 67.8 46 78.3
MD16G1202400 Malus domestica HOM05D002369 ORTHO05D002435 2.7e-10 67.8 47 76.6
Oeu002907.1 Olea europaea HOM05D002369 ORTHO05D002435 2.7e-10 67.8 45 80.0
RcHm_v2.0_Chr4g0388841 Rosa chinensis HOM05D002369 ORTHO05D002435 2.7e-10 67.8 47 76.6
SGA_v2.0_scaffold308G48116 Striga asiatica HOM05D000211 ORTHO05D002517 2.7e-10 67.8 43 81.4
TPR.G22810 Trifolium pratense HOM05D002369 ORTHO05D002435 2.7e-10 67.8 47 76.6
Prupe.1G024000 Prunus persica HOM05D002369 ORTHO05D002435 3.6e-10 67.4 47 76.6
CANSAT78G0524 Cannabis sativa HOM05D002369 ORTHO05D002435 4.7e-10 67.0 47 76.6
Duzib212G0042 Durio zibethinus HOM05D002369 ORTHO05D002435 4.7e-10 67.0 47 76.6
MD13G1202200 Malus domestica HOM05D002369 ORTHO05D002435 4.7e-10 67.0 47 76.6
SGA_v2.0_scaffold79G25610 Striga asiatica HOM05D002369 ORTHO05D002435 4.7e-10 67.0 49 71.4
MSTRG.4075 Avicennia marina HOM05D002369 ORTHO05D002435 6.1e-10 66.6 42 83.3
Dinv14063 Davidia involucrata HOM05D002369 ORTHO05D002435 6.1e-10 66.6 43 81.4
CAN.G749.11 Capsicum annuum HOM05D002369 ORTHO05D002435 7.9e-10 66.2 42 83.3
Lsat_1_v5_gn_3_123940 Lactuca sativa HOM05D002369 ORTHO05D002435 7.9e-10 66.2 42 83.3
arahy.Tifrunner.gnm1.ann1.D98VB5 Arachis hypogaea HOM05D002369 ORTHO05D002435 1.0e-09 65.9 47 72.3
Dinv44599 Davidia involucrata HOM05D002369 ORTHO05D002435 1.0e-09 65.9 42 83.3
Migut.G00406 Erythranthe guttata HOM05D002369 ORTHO05D002435 1.0e-09 65.9 42 83.3
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 1.0e-09 65.9 41 85.4
FvH4_4g01800 Fragaria vesca HOM05D002369 ORTHO05D002435 1.0e-09 65.9 49 71.4
FAN12G3469 Fragaria x ananassa HOM05D002369 ORTHO05D002435 1.0e-09 65.9 49 71.4
Solyc09g082940.3 Solanum lycopersicum HOM05D002369 ORTHO05D002435 1.0e-09 65.9 42 83.3
Sopen09g031810 Solanum pennellii HOM05D002369 ORTHO05D002435 1.0e-09 65.9 42 83.3
PGSC0003DMG400006078 Solanum tuberosum HOM05D002369 ORTHO05D002435 1.0e-09 65.9 42 83.3
TWI53G0837 Tripterygium wilfordii HOM05D002369 ORTHO05D002435 1.0e-09 65.9 47 74.5
Actinidia18524 Actinidia chinensis HOM05D002369 ORTHO05D002435 1.4e-09 65.5 45 77.8
FAN17G0856 Fragaria x ananassa HOM05D002369 ORTHO05D002435 1.4e-09 65.5 47 74.5
FAN22G2026 Fragaria x ananassa HOM05D002369 ORTHO05D002435 1.4e-09 65.5 47 74.5
Gohir.A10G117266 Gossypium hirsutum HOM05D002369 ORTHO05D002435 1.4e-09 65.5 48 72.9
Gohir.D10G150000 Gossypium hirsutum HOM05D002369 ORTHO05D002435 1.4e-09 65.5 42 83.3
Gorai.011G167000 Gossypium raimondii HOM05D002369 ORTHO05D002435 1.4e-09 65.5 42 83.3
Phvul.007G111000 Phaseolus vulgaris HOM05D002369 ORTHO05D002435 1.4e-09 65.5 46 76.1
AL3G37320 Arabidopsis lyrata HOM05D002369 ORTHO05D002435 1.8e-09 65.1 41 82.9
AT3G22942 Arabidopsis thaliana HOM05D002369 ORTHO05D002435 1.8e-09 65.1 41 82.9
CARHR098880 Cardamine hirsuta HOM05D002369 ORTHO05D002435 1.8e-09 65.1 41 82.9
DCAR_002359 Daucus carota HOM05D002369 ORTHO05D002435 2.3e-09 64.7 42 78.6
Manes.03G171400 Manihot esculenta HOM05D002369 ORTHO05D002435 2.3e-09 64.7 49 69.4
Sabra15G0152500 Salix brachista HOM05D002369 ORTHO05D002435 2.3e-09 64.7 42 78.6
Sed0012249 Sechium edule HOM05D002369 ORTHO05D002435 2.3e-09 64.7 41 80.5
BcaB03g14641 Brassica carinata HOM05D002369 ORTHO05D002435 3.0e-09 64.3 41 82.9
BcaC01g03410 Brassica carinata HOM05D002369 ORTHO05D002435 3.0e-09 64.3 41 82.9
A03p43070 Brassica napus HOM05D002369 ORTHO05D002435 3.0e-09 64.3 41 82.9
C03p52860 Brassica napus HOM05D002369 ORTHO05D002435 3.0e-09 64.3 41 82.9
BolC3t17553H Brassica oleracea HOM05D002369 ORTHO05D002435 3.0e-09 64.3 41 82.9
BraA03t13449Z Brassica rapa HOM05D002369 ORTHO05D002435 3.0e-09 64.3 41 82.9
CSS0011418 Camellia sinensis var. sinensis HOM05D002369 ORTHO05D002435 3.0e-09 64.3 45 77.8
ClCG05G004760 Citrullus lanatus HOM05D002369 ORTHO05D002435 3.0e-09 64.3 41 80.5
Ciclev10006282m.g Citrus clementina HOM05D002369 ORTHO05D002435 3.0e-09 64.3 43 79.1
Eucgr.H03396 Eucalyptus grandis HOM05D002369 ORTHO05D002435 3.0e-09 64.3 42 81.0
Nitab4.5_0000941g0110 Nicotiana tabacum HOM05D002369 ORTHO05D002435 3.0e-09 64.3 42 81.0
PSO210G4121 Papaver somniferum HOM05D002369 ORTHO05D002435 3.0e-09 64.3 43 79.1
PSO461G0081 Papaver somniferum HOM05D002369 ORTHO05D002435 3.0e-09 64.3 43 79.1
Peaxi162Scf00788g00012 Petunia axillaris HOM05D002369 ORTHO05D002435 3.0e-09 64.3 42 81.0
Potri.015G142500 Populus trichocarpa HOM05D002369 ORTHO05D002435 3.0e-09 64.3 45 73.3
THA.LOC104808581 Tarenaya hassleriana HOM05D002369 ORTHO05D002435 3.0e-09 64.3 42 78.6
Glyma.10G178700 Glycine max HOM05D002369 ORTHO05D002435 3.9e-09 63.9 46 73.9
ATR0665G333 Amborella trichopoda HOM05D002369 ORTHO05D002435 5.1e-09 63.5 42 76.2
BraA01t03343Z Brassica rapa HOM05D002369 ORTHO05D002435 5.1e-09 63.5 41 80.5
MELO3C006489.2 Cucumis melo HOM05D002369 ORTHO05D002435 5.1e-09 63.5 41 78.0
ECA240G0675 Erigeron canadensis HOM05D002369 ORTHO05D002435 5.1e-09 63.5 42 81.0
HanXRQChr13g0423531 Helianthus annuus HOM05D002369 ORTHO05D002435 5.1e-09 63.5 42 81.0
Lj5g0017731 Lotus japonicus HOM05D002369 ORTHO05D002435 5.1e-09 63.5 43 74.4
QL06p000522 Quercus lobata HOM05D002369 ORTHO05D002435 5.1e-09 63.5 47 76.6
Sed0012894 Sechium edule HOM05D002369 ORTHO05D002435 5.1e-09 63.5 41 78.0
vmacro15392 Vaccinium macrocarpon HOM05D002369 ORTHO05D002435 5.1e-09 63.5 46 71.7
Rhsim04G0195900 Rhododendron simsii HOM05D002369 ORTHO05D002435 6.7e-09 63.2 42 81.0
Sp3g20630 Schrenkiella parvula HOM05D002369 ORTHO05D002435 6.7e-09 63.2 41 78.0
Gohir.A09G220600 Gossypium hirsutum HOM05D002369 ORTHO05D002435 8.8e-09 62.8 41 80.5
Gohir.D09G222900 Gossypium hirsutum HOM05D002369 ORTHO05D002435 8.8e-09 62.8 41 80.5
Gorai.006G244200 Gossypium raimondii HOM05D002369 ORTHO05D002435 8.8e-09 62.8 41 80.5
BcaC09g49225 Brassica carinata HOM05D002369 ORTHO05D002435 1.1e-08 62.4 41 78.0
BcaC09g49226 Brassica carinata HOM05D002369 ORTHO05D002435 1.1e-08 62.4 41 78.0
C01p41210 Brassica napus HOM05D002369 ORTHO05D002435 1.1e-08 62.4 41 78.0
BolC1t04075H Brassica oleracea HOM05D002369 ORTHO05D002435 1.1e-08 62.4 41 78.0
Carub.0003s2307 Capsella rubella HOM05D002369 ORTHO05D002435 1.1e-08 62.4 41 78.0
Psat0s2465g0080 Pisum sativum HOM05D002369 ORTHO05D002435 1.1e-08 62.4 46 67.4
PGSC0003DMG401016272 Solanum tuberosum HOM05D002369 ORTHO05D002435 1.1e-08 62.4 48 66.7
MELO3C014277.2 Cucumis melo HOM05D002369 ORTHO05D002435 1.5e-08 62.0 42 76.2
CsaV3_3G012780 Cucumis sativus L. HOM05D002369 ORTHO05D002435 1.5e-08 62.0 41 75.6
HanXRQChr03g0092851 Helianthus annuus HOM05D002369 ORTHO05D002435 1.5e-08 62.0 46 69.6
Manes.15G034200 Manihot esculenta HOM05D002369 ORTHO05D002435 1.5e-08 62.0 49 65.3
PGR004G0390 Punica granatum HOM05D002369 ORTHO05D002435 1.5e-08 62.0 42 78.6
ClCG06G006560 Citrullus lanatus HOM05D002369 ORTHO05D002435 2.0e-08 61.6 41 75.6
CsaV3_2G013330 Cucumis sativus L. HOM05D002369 ORTHO05D002435 2.0e-08 61.6 41 75.6
MSTRG.9944 Avicennia marina HOM05D002369 ORTHO05D002435 2.6e-08 61.2 42 76.2
Nn3g19458 Nelumbo nucifera HOM05D002369 ORTHO05D002435 2.6e-08 61.2 42 73.8
TWI09G0544 Tripterygium wilfordii HOM05D002369 ORTHO05D002435 2.6e-08 61.2 47 72.3
GSVIVG01018076001 Vitis vinifera HOM05D002369 ORTHO05D002435 2.6e-08 61.2 42 76.2
TAR549G0004 Trochodendron aralioides HOM05D002369 ORTHO05D002435 3.3e-08 60.8 42 76.2
Aqoxy2G03486 Aquilegia oxysepala HOM05D002369 ORTHO05D002435 4.4e-08 60.5 42 76.2
PGR142G4304 Punica granatum HOM05D002369 ORTHO05D002435 4.4e-08 60.5 47 68.1
Actinidia40105 Actinidia chinensis HOM05D002369 ORTHO05D002435 5.7e-08 60.1 42 78.6
Lalb_Chr19g0127861 Lupinus albus HOM05D002369 ORTHO05D002435 5.7e-08 60.1 47 70.2
TPR.G39103 Trifolium pratense HOM05D002369 ORTHO05D002435 5.7e-08 60.1 42 71.4
Duzib052G0941 Durio zibethinus HOM05D002369 ORTHO05D002435 7.4e-08 59.7 47 68.1
Atru.chr4.2318 Acer truncatum HOM05D002369 ORTHO05D002435 9.7e-08 59.3 47 70.2
Medtr1g071100 Medicago truncatula HOM05D002369 ORTHO05D002435 1.3e-07 58.9 42 69.0
PSO210G7530 Papaver somniferum HOM05D002369 ORTHO05D002435 1.7e-07 58.5 38 78.9
TAR362G0818 Trochodendron aralioides HOM05D002369 ORTHO05D002435 1.7e-07 58.5 44 75.0
Rhsim02G0031300 Rhododendron simsii HOM05D002369 ORTHO05D002435 2.2e-07 58.2 47 70.2
BcaB04g20484 Brassica carinata HOM05D002369 ORTHO05D002435 2.8e-07 57.8 41 73.2
COL.COLO4_09172 Corchorus olitorius HOM05D002369 ORTHO05D002435 2.8e-07 57.8 42 69.0
Eucgr.B01476 Eucalyptus grandis HOM05D002369 ORTHO05D002435 2.8e-07 57.8 57 57.9
arahy.Tifrunner.gnm1.ann1.YZC8KD Arachis hypogaea HOM05D002369 ORTHO05D002435 4.8e-07 57.0 59 57.6
PSO210G0026 Papaver somniferum HOM05D002369 ORTHO05D002435 4.8e-07 57.0 38 76.3
Haze_04631 Corylus avellana HOM05D002369 ORTHO05D002435 8.2e-07 56.2 41 65.9
Glyma.10G030900 Glycine max HOM05D002369 ORTHO05D002435 1.1e-06 55.8 42 66.7
Gohir.A08G062800 Gossypium hirsutum HOM05D002369 ORTHO05D002435 1.1e-06 55.8 42 64.3
Gohir.D08G071900 Gossypium hirsutum HOM05D002369 ORTHO05D002435 1.1e-06 55.8 42 64.3
Gorai.004G075900 Gossypium raimondii HOM05D002369 ORTHO05D002435 1.1e-06 55.8 42 64.3
Potri.005G216100 Populus trichocarpa HOM05D002369 ORTHO05D002435 1.1e-06 55.8 42 66.7
Duzib138G1466 Durio zibethinus HOM05D002369 ORTHO05D002435 1.4e-06 55.5 42 66.7
Potri.002G046900 Populus trichocarpa HOM05D002369 ORTHO05D002435 1.8e-06 55.1 42 66.7
Ciclev10022979m.g Citrus clementina HOM05D002369 ORTHO05D002435 2.4e-06 54.7 42 66.7
Sabra05G0165600 Salix brachista HOM05D002369 ORTHO05D002435 2.4e-06 54.7 42 66.7
MELO3C031169.2 Cucumis melo HOM05D002369 ORTHO05D002435 3.1e-06 54.3 41 65.9
CsaV3_2G013810 Cucumis sativus L. HOM05D002369 ORTHO05D002435 3.1e-06 54.3 41 65.9
Duzib133G1543 Durio zibethinus HOM05D002369 ORTHO05D002435 3.1e-06 54.3 42 64.3
Sed0025388 Sechium edule HOM05D002369 ORTHO05D002435 3.1e-06 54.3 41 65.9
Duzib211G0265 Durio zibethinus HOM05D002369 ORTHO05D002435 4.1e-06 53.9 42 64.3
Thecc.01G269900 Theobroma cacao HOM05D002369 ORTHO05D002435 4.1e-06 53.9 42 64.3
Atru.chr5.1536 Acer truncatum HOM05D002369 ORTHO05D002435 5.3e-06 53.5 41 65.9
Glyma.02G143500 Glycine max HOM05D002369 ORTHO05D002435 5.3e-06 53.5 42 64.3
MD03G1256500 Malus domestica HOM05D002369 ORTHO05D002435 7.0e-06 53.1 43 65.1
Zm00001eb050990 Zea mays HOM05D002369 ORTHO05D002435 7.0e-06 53.1 43 60.5
Gohir.D11G131350 Gossypium hirsutum HOM05D002369 ORTHO05D002435 9.1e-06 52.8 42 64.3
Gorai.007G140700 Gossypium raimondii HOM05D002369 ORTHO05D002435 9.1e-06 52.8 42 64.3


User provided reference genes

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