Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 6.7e-73 277.3 148 100.0
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 7.0e-62 240.7 146 83.6
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.1e-59 233.4 146 78.8
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 1.5e-59 233.0 145 82.8
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.5e-59 233.0 146 80.8
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.2e-59 231.9 146 80.8
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.2e-59 231.9 142 81.7
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 7.2e-59 230.7 147 81.6
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 2.1e-58 229.2 146 78.8
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 2.1e-58 229.2 145 80.0
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 2.1e-58 229.2 144 80.6
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 2.1e-58 229.2 145 81.4
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 3.6e-58 228.4 146 79.5
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 3.6e-58 228.4 144 80.6
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.7e-58 228.0 147 79.6
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 6.1e-58 227.6 147 79.6
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 8.0e-58 227.3 147 78.9
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 8.0e-58 227.3 145 78.6
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.8e-57 226.1 144 79.9
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 1.8e-57 226.1 147 78.9
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 3.0e-57 225.3 146 80.1
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 4.0e-57 224.9 146 78.8
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 5.2e-57 224.6 145 80.0
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 5.2e-57 224.6 136 84.6
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 6.7e-57 224.2 146 78.8
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 8.8e-57 223.8 145 79.3
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 8.8e-57 223.8 146 78.8
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 8.8e-57 223.8 147 78.2
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 1.2e-56 223.4 146 80.1
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.2e-56 223.4 146 80.1
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 1.2e-56 223.4 143 79.7
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 1.2e-56 223.4 145 78.6
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.5e-56 223.0 140 80.7
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.5e-56 223.0 147 78.2
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 1.5e-56 223.0 142 80.3
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 2.0e-56 222.6 136 83.8
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 2.6e-56 222.2 143 80.4
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 2.6e-56 222.2 147 78.2
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 2.6e-56 222.2 136 83.1
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 2.6e-56 222.2 146 78.8
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 2.6e-56 222.2 142 78.2
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 2.6e-56 222.2 142 78.2
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 3.3e-56 221.9 146 79.5
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 3.3e-56 221.9 143 77.6
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 3.3e-56 221.9 146 78.8
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 4.4e-56 221.5 146 79.5
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 4.4e-56 221.5 146 79.5
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.4e-56 221.5 145 77.2
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 5.7e-56 221.1 146 78.8
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 5.7e-56 221.1 145 77.9
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 5.7e-56 221.1 145 77.9
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 5.7e-56 221.1 147 78.2
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 7.5e-56 220.7 136 83.1
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 7.5e-56 220.7 136 82.4
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 9.7e-56 220.3 144 79.2
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 9.7e-56 220.3 146 78.1
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 9.7e-56 220.3 146 78.1
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 9.7e-56 220.3 147 76.9
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.3e-55 219.9 144 77.8
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.3e-55 219.9 146 78.8
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 1.3e-55 219.9 141 78.0
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 1.3e-55 219.9 141 78.0
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 1.3e-55 219.9 145 77.2
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.7e-55 219.5 147 77.6
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 2.2e-55 219.2 145 79.3
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 2.2e-55 219.2 146 78.8
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 2.8e-55 218.8 136 80.9
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.8e-55 218.8 142 78.9
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 2.8e-55 218.8 144 77.1
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 3.7e-55 218.4 138 79.7
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 3.7e-55 218.4 138 79.7
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 3.7e-55 218.4 145 78.6
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.8e-55 218.0 141 77.3
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 4.8e-55 218.0 147 78.2
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 6.3e-55 217.6 145 80.7
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.1e-54 216.9 144 79.2
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.4e-54 216.5 146 76.7
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.8e-54 216.1 142 76.1
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 2.4e-54 215.7 142 75.4
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 3.1e-54 215.3 149 75.8
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 4.1e-54 214.9 141 76.6
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 7.0e-54 214.2 141 76.6
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 7.0e-54 214.2 141 76.6
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 7.0e-54 214.2 141 75.9
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 9.1e-54 213.8 145 74.5
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.2e-53 213.4 141 75.2
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.6e-53 213.0 144 78.5
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.6e-53 213.0 144 76.4
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 2.7e-53 212.2 136 78.7
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 3.5e-53 211.8 146 72.6
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.5e-53 211.8 146 74.7
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 4.5e-53 211.5 146 76.0
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 5.9e-53 211.1 146 76.0
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 7.7e-53 210.7 141 76.6
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 7.7e-53 210.7 146 73.3
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 7.7e-53 210.7 146 74.0
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 7.7e-53 210.7 148 73.0
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 1.7e-52 209.5 145 71.7
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 8.5e-52 207.2 137 74.5
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 1.1e-51 206.8 137 74.5
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 4.2e-51 204.9 140 75.0
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 4.2e-51 204.9 146 71.2
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 2.3e-49 199.1 142 70.4
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 3.0e-49 198.7 146 70.5
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 1.2e-48 196.8 146 69.9
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 1.7e-47 193.0 123 80.5
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 2.2e-47 192.6 144 68.1
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.4e-46 189.1 148 70.3
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 4.1e-46 188.3 146 67.8
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 4.1e-46 188.3 140 67.9
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 7.0e-46 187.6 140 67.9
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 2.0e-45 186.0 140 67.1
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 2.0e-45 186.0 135 69.6
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 2.0e-45 186.0 140 67.1
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 2.0e-45 186.0 118 78.0
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 7.7e-45 184.1 138 68.8
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 7.7e-45 184.1 138 68.8
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 7.7e-45 184.1 138 68.8
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 7.7e-45 184.1 137 68.6
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.0e-44 183.7 141 68.1
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 2.9e-44 182.2 139 67.6
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 3.8e-44 181.8 140 67.1
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 6.5e-44 181.0 137 68.6
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 2.5e-43 179.1 147 66.0
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.5e-43 179.1 120 79.2
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 6.1e-42 174.5 138 63.0
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 8.0e-42 174.1 147 66.0
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 3.0e-41 172.2 136 68.4
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 3.0e-41 172.2 136 68.4
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 4.0e-41 171.8 147 64.6
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 5.2e-41 171.4 145 63.4
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 6.8e-41 171.0 142 62.0
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 2.4e-38 162.5 138 61.6
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.2e-37 160.2 147 60.5
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 7.3e-35 151.0 141 58.2
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 8.9e-33 144.1 134 59.7
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.4e-32 142.1 132 58.3
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 3.2e-30 135.6 112 59.8
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 2.7e-29 132.5 139 55.4
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 5.2e-25 118.2 90 70.0
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 3.7e-23 112.1 106 56.6
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 7.0e-22 107.8 136 41.2
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 1.0e-20 104.0 96 60.4
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 2.1e-18 96.3 138 39.1
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 4.6e-13 78.6 87 49.4
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 8.6e-12 74.3 46 76.1


User provided reference genes

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