Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 4.2e-134 481.5 262 100.0
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 2.6e-72 276.2 260 66.5
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 5.2e-60 235.3 279 56.3
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 3.4e-59 232.6 268 58.2
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 4.4e-59 232.3 267 56.9
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 4.4e-59 232.3 267 59.6
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.8e-58 229.6 268 56.7
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 1.1e-57 227.6 267 56.9
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 1.4e-57 227.3 266 55.6
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.2e-56 224.2 265 56.2
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.6e-56 223.8 272 54.8
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.0e-56 223.4 266 56.0
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 7.7e-56 221.5 267 56.9
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.0e-55 221.1 267 55.8
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.3e-55 219.9 267 55.4
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 6.6e-55 218.4 268 55.2
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 2.5e-54 216.5 270 56.3
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 2.5e-54 216.5 270 54.4
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 4.2e-54 215.7 267 55.1
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 7.2e-54 214.9 267 55.4
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 2.8e-53 213.0 265 55.1
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 6.1e-53 211.8 271 53.1
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 8.0e-53 211.5 271 55.0
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 8.0e-53 211.5 266 53.8
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 8.0e-53 211.5 269 53.5
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.4e-52 210.7 269 55.4
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.4e-52 210.7 277 52.0
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 1.4e-52 210.7 268 54.5
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 3.0e-52 209.5 267 54.7
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 4.0e-52 209.1 268 54.1
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 5.2e-52 208.8 265 57.0
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 6.8e-52 208.4 268 53.0
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.5e-51 207.2 265 55.8
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 4.4e-51 205.7 266 53.0
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.4e-51 205.7 269 52.4
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 5.7e-51 205.3 262 51.9
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 9.8e-51 204.5 267 53.2
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 9.8e-51 204.5 268 53.0
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 3.7e-50 202.6 268 53.4
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 4.9e-50 202.2 255 52.2
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 8.3e-50 201.4 247 56.7
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 1.4e-49 200.7 269 53.2
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 2.4e-49 199.9 277 54.2
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 3.2e-49 199.5 262 50.8
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 3.2e-49 199.5 269 49.4
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 3.2e-49 199.5 255 52.5
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.1e-49 199.1 261 51.0
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 5.4e-49 198.7 267 51.3
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 7.0e-49 198.4 272 52.6
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 9.2e-49 198.0 270 54.1
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 9.2e-49 198.0 275 53.8
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 9.2e-49 198.0 268 49.6
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 1.2e-48 197.6 256 52.3
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 1.2e-48 197.6 255 51.8
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.0e-48 196.8 268 53.4
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 1.3e-47 194.1 291 49.8
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 1.7e-47 193.7 272 49.6
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 2.3e-47 193.4 263 50.2
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 8.6e-47 191.4 270 47.4
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.1e-46 191.0 265 49.8
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.9e-46 190.3 267 50.2
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.3e-46 189.1 262 51.5
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.2e-45 187.6 245 50.6
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 4.7e-45 185.7 261 53.6
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 6.1e-45 185.3 264 50.4
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 1.0e-44 184.5 255 53.7
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.4e-44 184.1 263 49.0
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 1.4e-44 184.1 294 47.6
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 3.1e-44 183.0 260 48.1
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 5.2e-44 182.2 266 49.2
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 6.8e-44 181.8 264 49.2
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 4.4e-43 179.1 180 57.2
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 4.9e-42 175.6 270 48.9
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 6.4e-42 175.3 246 48.4
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.4e-41 174.1 260 52.3
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 7.0e-41 171.8 277 46.6
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.6e-40 170.6 192 57.3
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 7.8e-40 168.3 260 50.4
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.0e-39 167.9 265 49.1
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.7e-39 167.2 267 48.7
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 3.0e-39 166.4 264 47.0
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.0e-39 166.4 260 44.6
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 3.0e-39 166.4 273 45.1
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 3.9e-39 166.0 276 43.8
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 5.0e-39 165.6 265 48.7
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 6.6e-39 165.2 256 46.9
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 1.9e-38 163.7 249 48.6
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 2.3e-36 156.8 262 43.5
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.1e-36 156.4 267 44.6
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 6.8e-36 155.2 252 44.0
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 8.9e-36 154.8 193 50.3
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.5e-35 154.1 222 51.8
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 3.4e-35 152.9 248 47.2
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 3.4e-35 152.9 256 40.6
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 4.4e-35 152.5 268 46.6
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 7.5e-35 151.8 249 46.6
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 1.3e-34 151.0 249 47.4
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 2.2e-34 150.2 276 41.7
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 2.9e-34 149.8 173 53.8
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.9e-34 149.1 277 46.6
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 4.9e-34 149.1 248 46.8
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 4.9e-34 149.1 238 44.5
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 8.3e-34 148.3 218 50.0
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 7.1e-33 145.2 249 46.2
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 9.2e-33 144.8 249 47.0
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 9.2e-33 144.8 249 47.0
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 9.2e-33 144.8 255 45.5
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.2e-32 144.4 256 46.9
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 4.6e-32 142.5 264 45.1
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 4.6e-32 142.5 247 46.6
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.7e-31 140.6 267 44.6
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 3.0e-31 139.8 267 43.8
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 3.9e-31 139.4 187 51.9
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 5.1e-31 139.0 270 42.6
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 6.6e-31 138.7 227 48.5
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.9e-30 137.1 265 42.3
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 3.3e-30 136.3 267 44.2
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 7.3e-30 135.2 269 43.1
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 1.2e-29 134.4 255 45.5
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.1e-29 133.7 172 47.7
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.2e-27 127.9 260 44.6
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 4.4e-27 125.9 274 39.8
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 5.8e-27 125.6 271 36.9
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 5.8e-27 125.6 261 43.7
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 6.4e-26 122.1 278 39.2
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 6.4e-26 122.1 278 39.2
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 8.3e-26 121.7 280 38.9
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 8.3e-26 121.7 280 38.9
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 2.4e-25 120.2 180 43.9
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 3.2e-25 119.8 280 41.8
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 4.6e-24 115.9 149 49.0
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.3e-23 113.6 264 42.8
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 3.0e-23 113.2 176 43.8
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 2.5e-22 110.2 264 41.3
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 5.6e-22 109.0 277 40.8
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.2e-19 101.3 273 37.7
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 3.4e-19 99.8 271 36.2
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 8.4e-18 95.1 110 50.0
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 5.4e-17 92.4 74 78.4
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 1.0e-15 88.2 271 34.7
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.5e-14 83.6 112 46.4
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 1.1e-12 78.2 239 32.2
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 6.6e-07 58.9 152 34.9
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 1.5e-06 57.8 121 33.1
MSTRG.7055 Avicennia marina HOM05D003370 ORTHO05D003848 1.5e-06 57.8 163 31.3
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.5e-06 57.8 69 46.4
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.5e-06 57.8 155 32.9
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.5e-06 57.8 155 32.9
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 3.3e-06 56.6 152 32.9
MBI02_g25678_MAGBIO Magnolia biondii HOM05D003370 ORTHO05D003848 4.3e-06 56.2 157 32.5
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 4.3e-06 56.2 152 32.2
SEGI_10387 Sequoiadendron giganteum HOM05D003370 ORTHO05D003848 9.6e-06 55.1 159 30.2


User provided reference genes

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