Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 2.8e-112 408.7 215 100.0
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.6e-81 305.8 205 77.6
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 7.5e-81 304.3 205 77.1
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 3.7e-80 302.0 211 73.0
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.5e-78 295.4 233 70.4
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 4.5e-78 295.0 212 73.1
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 1.0e-77 293.9 212 72.6
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 6.5e-77 291.2 211 72.5
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 5.5e-76 288.1 201 74.6
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.6e-75 286.6 212 73.6
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.6e-75 286.6 212 71.2
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.7e-75 285.8 211 70.6
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 4.7e-75 285.0 200 73.0
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 5.2e-74 281.6 199 71.9
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 5.2e-74 281.6 211 69.7
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.5e-73 280.0 205 71.7
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 7.5e-73 277.7 200 70.0
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.2e-72 276.2 211 70.1
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 2.8e-72 275.8 205 70.7
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 3.7e-72 275.4 205 70.7
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 4.8e-72 275.0 198 71.7
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 4.8e-72 275.0 214 68.7
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 4.8e-72 275.0 209 69.9
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 6.3e-72 274.6 205 69.8
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.1e-71 273.9 209 69.4
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 3.1e-71 272.3 201 73.6
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 3.1e-71 272.3 206 70.4
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 7.0e-71 271.2 209 71.3
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 7.0e-71 271.2 202 68.8
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.2e-70 270.4 208 68.8
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 3.5e-70 268.9 198 71.7
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 4.5e-70 268.5 205 69.3
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 5.9e-70 268.1 212 66.5
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 7.7e-70 267.7 201 69.2
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 7.7e-70 267.7 204 71.1
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 7.7e-70 267.7 199 69.8
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.0e-69 267.3 209 68.9
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.3e-69 266.9 207 70.5
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.3e-69 266.9 200 70.5
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.3e-69 266.9 212 67.9
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.3e-69 266.9 209 69.4
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.7e-69 266.5 207 70.0
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.7e-69 266.5 202 68.8
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.8e-69 265.4 202 68.8
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 5.0e-69 265.0 207 69.1
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 8.5e-69 264.2 199 69.3
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 8.5e-69 264.2 199 69.8
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 8.5e-69 264.2 204 69.1
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.9e-68 263.1 199 68.8
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.9e-68 263.1 202 68.3
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.5e-68 262.7 202 68.3
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 2.5e-68 262.7 206 68.9
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 3.2e-68 262.3 199 69.3
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 3.2e-68 262.3 199 69.3
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.1e-67 259.6 199 68.3
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 2.7e-67 259.2 204 67.6
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.7e-67 259.2 192 70.8
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 4.7e-67 258.5 200 69.0
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 6.1e-67 258.1 214 64.5
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.0e-66 257.3 205 66.8
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.4e-66 256.9 204 69.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.8e-66 256.5 201 66.7
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.8e-66 256.5 201 66.7
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 4.0e-66 255.4 213 63.8
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 6.8e-66 254.6 207 66.7
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 6.8e-66 254.6 207 66.7
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 8.8e-66 254.2 203 67.5
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 8.8e-66 254.2 215 63.3
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.2e-65 253.8 208 65.9
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.2e-65 253.8 209 65.1
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.2e-65 253.8 209 65.1
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.2e-65 253.8 209 65.1
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.2e-65 253.8 215 63.3
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.5e-65 253.4 209 65.6
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 2.0e-65 253.1 201 65.7
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 2.0e-65 253.1 192 68.8
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 2.6e-65 252.7 192 67.7
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.4e-65 252.3 209 65.1
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 5.7e-65 251.5 199 65.8
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 9.8e-65 250.8 199 68.3
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.7e-64 250.0 203 66.5
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.7e-64 250.0 205 66.8
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.7e-64 250.0 209 64.6
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 4.9e-64 248.4 208 65.9
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 4.9e-64 248.4 213 63.8
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 6.3e-64 248.1 208 65.9
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 6.3e-64 248.1 199 66.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 4.5e-62 241.9 192 66.7
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.0e-61 240.7 188 68.1
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 2.3e-61 239.6 216 64.4
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 2.3e-61 239.6 214 65.0
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 3.8e-61 238.8 180 70.6
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 2.5e-60 236.1 194 66.5
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 2.8e-59 232.6 199 62.3
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.8e-58 229.9 215 62.8
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.3e-58 229.6 216 60.6
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 3.0e-58 229.2 216 59.7
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 4.0e-58 228.8 199 62.8
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 5.2e-58 228.4 222 58.1
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 6.8e-58 228.0 199 62.3
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 2.0e-57 226.5 216 59.7
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.4e-57 225.7 202 62.4
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.4e-57 225.3 202 58.9
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 9.8e-57 224.2 228 60.1
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 9.8e-57 224.2 228 60.1
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.3e-56 223.8 215 60.5
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.7e-56 222.2 204 56.9
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.7e-56 222.2 204 56.9
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 4.9e-56 221.9 204 59.8
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.9e-56 221.9 230 58.3
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 8.3e-56 221.1 202 58.4
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.8e-55 219.9 169 68.6
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 7.0e-55 218.0 189 62.4
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.2e-54 217.2 201 61.2
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.5e-54 215.7 198 60.1
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 3.5e-54 215.7 172 67.4
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 3.5e-54 215.7 172 68.0
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 3.5e-54 215.7 172 68.0
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.3e-53 213.8 225 54.2
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.9e-53 212.2 172 67.4
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 6.6e-53 211.5 162 70.4
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 8.6e-53 211.1 190 61.6
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 8.6e-53 211.1 193 59.1
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.5e-52 210.3 232 56.5
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 4.3e-52 208.8 236 53.0
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 9.5e-52 207.6 172 65.7
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 1.2e-51 207.2 199 56.3
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 8.0e-51 204.5 190 59.5
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 8.9e-50 201.1 147 72.8
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.2e-49 200.7 190 59.5
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.3e-48 197.2 209 54.1
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 7.0e-47 191.4 198 58.1
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 6.2e-43 178.3 128 73.4
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 8.1e-43 177.9 186 52.2
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 4.0e-42 175.6 193 53.4
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.2e-40 169.9 195 50.8
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 2.4e-39 166.4 201 48.8
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 4.1e-39 165.6 171 55.0
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 5.4e-39 165.2 181 51.4
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 7.1e-39 164.9 197 50.8
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 3.0e-37 159.5 180 50.6
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 5.1e-37 158.7 151 55.6
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.7e-35 152.1 186 49.5
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 8.1e-35 151.4 194 50.5
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.4e-34 150.6 115 71.3
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 5.2e-34 148.7 97 78.4
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 7.8e-30 134.8 96 76.0
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 1.5e-28 130.6 104 64.4
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 7.6e-25 118.2 197 41.1
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.4e-23 113.2 93 61.3
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 3.9e-21 105.9 82 65.9
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 3.9e-13 79.3 93 47.3
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.3e-12 75.9 145 44.1
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 8.1e-11 71.6 82 50.0
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 4.0e-10 69.3 50 64.0
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 1.5e-09 67.4 50 62.0
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 2.0e-09 67.0 63 63.5
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 9.3e-07 58.2 123 34.1
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 4.6e-06 55.8 75 42.7


User provided reference genes

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