Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 7.3e-125 450.7 244 100.0
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 7.1e-96 354.4 225 80.4
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.0e-94 350.5 243 78.6
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 2.3e-94 349.4 219 81.3
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 3.0e-94 349.0 219 82.2
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 5.1e-94 348.2 215 81.4
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 6.7e-94 347.8 217 81.6
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.1e-93 347.1 220 79.5
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.1e-93 347.1 220 79.5
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.5e-93 346.7 222 77.5
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 2.5e-93 345.9 216 80.6
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 2.5e-93 345.9 216 81.9
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 4.3e-93 345.1 219 80.4
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 4.3e-93 345.1 236 79.2
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.3e-92 343.6 216 80.1
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.1e-92 342.8 242 78.5
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 4.8e-92 341.7 214 79.4
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 8.2e-92 340.9 242 77.7
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 8.2e-92 340.9 222 77.9
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.1e-91 340.5 218 79.8
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.4e-91 340.1 243 76.5
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.4e-91 340.1 217 78.8
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 6.9e-91 337.8 218 79.4
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 6.9e-91 337.8 217 77.0
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 6.9e-91 337.8 219 78.5
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.2e-90 337.0 239 78.7
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.2e-90 337.0 217 78.3
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 1.5e-90 336.7 223 76.7
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.5e-90 336.7 222 77.9
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.5e-90 336.7 241 78.0
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.0e-90 336.3 220 77.7
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.6e-90 335.9 223 76.7
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 3.4e-90 335.5 219 76.7
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 3.4e-90 335.5 219 76.3
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 3.4e-90 335.5 215 77.7
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 3.4e-90 335.5 220 77.7
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 4.5e-90 335.1 217 78.8
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 7.6e-90 334.3 221 77.4
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 7.6e-90 334.3 223 76.2
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 1.0e-89 334.0 224 76.3
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 1.0e-89 334.0 265 69.1
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.3e-89 333.6 221 76.9
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 1.7e-89 333.2 223 76.7
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 2.2e-89 332.8 222 77.0
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 2.2e-89 332.8 216 77.8
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 2.2e-89 332.8 224 76.3
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.2e-89 332.8 213 79.8
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.9e-89 332.4 220 76.8
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.9e-89 332.4 220 76.4
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 3.8e-89 332.0 240 70.8
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 4.9e-89 331.6 219 77.2
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 1.9e-88 329.7 218 77.5
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.5e-88 329.3 215 76.3
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 3.2e-88 328.9 236 72.9
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 4.2e-88 328.6 217 78.3
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 5.5e-88 328.2 218 78.0
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 9.3e-88 327.4 229 74.7
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 1.6e-87 326.6 215 77.2
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 2.1e-87 326.2 218 77.5
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 3.5e-87 325.5 220 75.5
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 3.5e-87 325.5 220 75.5
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 3.5e-87 325.5 220 75.5
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 7.9e-87 324.3 220 75.5
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 7.9e-87 324.3 220 75.5
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 7.9e-87 324.3 222 74.3
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 7.9e-87 324.3 217 75.1
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.3e-86 323.6 219 75.3
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 2.3e-86 322.8 217 75.6
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 3.9e-86 322.0 221 74.2
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 3.9e-86 322.0 195 83.6
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 5.1e-86 321.6 216 76.4
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 5.1e-86 321.6 219 74.0
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 6.7e-86 321.2 222 73.4
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 8.7e-86 320.9 221 74.2
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 1.1e-85 320.5 218 74.3
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.1e-85 320.5 201 80.1
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 1.1e-85 320.5 256 66.8
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 1.1e-85 320.5 238 70.2
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 2.5e-85 319.3 196 81.6
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 4.3e-85 318.5 215 74.9
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 5.7e-85 318.2 220 74.5
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 5.7e-85 318.2 219 74.4
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 5.7e-85 318.2 217 75.6
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 7.4e-85 317.8 196 81.6
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 1.6e-84 316.6 184 85.3
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 2.2e-84 316.2 230 70.9
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 2.8e-84 315.8 199 77.9
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 1.4e-83 313.5 217 73.7
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 1.4e-83 313.5 218 73.4
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 4.1e-83 312.0 217 73.7
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 4.1e-83 312.0 217 73.3
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 5.3e-83 311.6 222 71.2
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 6.9e-83 311.2 216 73.1
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 1.2e-82 310.5 218 72.9
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.5e-82 310.1 177 86.4
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 2.6e-82 309.3 202 76.2
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 1.3e-81 307.0 295 58.3
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 8.5e-81 304.3 225 71.1
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.1e-80 303.9 225 70.7
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.4e-80 303.5 215 74.4
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 3.2e-80 302.4 214 74.3
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 4.2e-80 302.0 215 71.6
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.7e-79 299.3 234 70.1
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 3.6e-79 298.9 181 81.8
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 1.4e-78 297.0 183 79.2
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 3.3e-77 292.4 223 66.8
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 5.7e-77 291.6 181 76.8
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 2.2e-76 289.7 216 68.5
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 4.8e-76 288.5 222 68.5
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.4e-75 286.2 163 87.1
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 4.1e-75 285.4 205 73.7
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 4.1e-75 285.4 237 62.4
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 5.3e-75 285.0 163 87.1
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 4.5e-74 282.0 242 70.2
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 8.5e-73 277.7 196 67.3
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 7.2e-72 274.6 217 68.7
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 4.7e-71 271.9 180 73.9
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 3.7e-68 262.3 181 68.0
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 4.4e-61 238.8 184 69.0
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 4.8e-60 235.3 165 67.9
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.5e-56 223.8 167 67.7
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.5e-53 213.8 164 68.3
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 6.3e-52 208.4 153 71.2
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 5.0e-49 198.7 176 62.5
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 5.9e-42 175.3 120 77.5
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 7.7e-42 174.9 104 85.6
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 2.4e-27 126.7 127 53.5
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.2e-23 114.4 212 35.8
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 6.2e-23 112.1 87 62.1
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 1.5e-21 107.5 180 42.8
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.9e-19 100.5 93 61.3
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 2.4e-19 100.1 92 60.9
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 6.6e-17 92.0 79 51.9
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 2.5e-16 90.1 71 60.6
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 4.3e-16 89.4 53 81.1
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 6.2e-15 85.5 167 35.3
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.2e-10 71.2 46 76.1
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 3.3e-08 63.2 54 59.3
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 4.7e-07 59.3 31 87.1
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 6.8e-06 55.5 50 56.0


User provided reference genes

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