Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0003750 Simmondsia chinensis HOM05D007734 ORTHO05D009807 9.1e-47 189.9 96 100.0
Eucgr.H03661 Eucalyptus grandis HOM05D007734 ORTHO05D009807 5.4e-15 84.3 50 82.0
Gohir.D09G060100 Gossypium hirsutum HOM05D007734 ORTHO05D009807 1.2e-14 83.2 50 76.0
Thecc.04G274000 Theobroma cacao HOM05D007734 ORTHO05D009807 1.6e-14 82.8 50 74.0
QL06p006592 Quercus lobata HOM05D007734 ORTHO05D009807 2.7e-14 82.0 50 72.0
Gorai.006G074800 Gossypium raimondii HOM05D007734 ORTHO05D009807 3.5e-14 81.6 50 74.0
Sed0021110 Sechium edule HOM05D007734 ORTHO05D009807 3.5e-14 81.6 50 76.0
Atru.chr4.2717 Acer truncatum HOM05D007734 ORTHO05D009807 4.6e-14 81.3 48 79.2
Duzib151G0459 Durio zibethinus HOM05D007734 ORTHO05D009807 4.6e-14 81.3 50 72.0
CiPaw.01G155700 Carya illinoinensis HOM05D007734 ORTHO05D009807 6.0e-14 80.9 50 72.0
SGA_v2.0_scaffold142G35667 Striga asiatica HOM05D007734 ORTHO05D009807 6.0e-14 80.9 50 74.0
Haze_01029 Corylus avellana HOM05D007734 ORTHO05D009807 7.8e-14 80.5 50 70.0
Migut.G00233 Erythranthe guttata HOM05D007734 ORTHO05D009807 1.3e-13 79.7 50 74.0
MD13G1176100 Malus domestica HOM05D007734 ORTHO05D009807 1.3e-13 79.7 50 70.0
Lj4g0025137 Lotus japonicus HOM05D007734 ORTHO05D009807 1.7e-13 79.3 50 68.0
Aa31LG11G10850 Aethionema arabicum HOM05D007734 ORTHO05D009807 2.3e-13 79.0 50 66.0
Hma1.2p1_0643F.1_g194590 Hydrangea macrophylla HOM05D007734 ORTHO05D009807 2.3e-13 79.0 50 72.0
Cfa015520 Carpinus fangiana HOM05D007734 ORTHO05D009807 3.0e-13 78.6 50 68.0
MELO3C021378.2 Cucumis melo HOM05D007734 ORTHO05D009807 3.0e-13 78.6 50 72.0
CsaV3_6G005600 Cucumis sativus L. HOM05D007734 ORTHO05D009807 3.0e-13 78.6 50 72.0
MD16G1177900 Malus domestica HOM05D007734 ORTHO05D009807 3.0e-13 78.6 50 66.0
CAN.G627.13 Capsicum annuum HOM05D007734 ORTHO05D009807 3.9e-13 78.2 50 68.0
ClCG06G005560 Citrullus lanatus HOM05D007734 ORTHO05D009807 3.9e-13 78.2 50 70.0
Duzib052G0038 Durio zibethinus HOM05D007734 ORTHO05D009807 3.9e-13 78.2 50 68.0
CiPaw.02G088300 Carya illinoinensis HOM05D007734 ORTHO05D009807 5.1e-13 77.8 50 68.0
Ciclev10007097m.g Citrus clementina HOM05D007734 ORTHO05D009807 5.1e-13 77.8 61 65.6
Gohir.D10G164200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 5.1e-13 77.8 50 66.0
Gorai.011G183300 Gossypium raimondii HOM05D007734 ORTHO05D009807 5.1e-13 77.8 50 66.0
FAN07G1074 Fragaria x ananassa HOM05D007734 ORTHO05D009807 6.6e-13 77.4 59 61.0
Gohir.A09G061200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 6.6e-13 77.4 50 70.0
TWI09G1295 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 6.6e-13 77.4 56 64.3
CANSAT78G1562 Cannabis sativa HOM05D007734 ORTHO05D009807 1.5e-12 76.3 50 70.0
Gohir.A10G104500 Gossypium hirsutum HOM05D007734 ORTHO05D009807 1.5e-12 76.3 50 64.0
Sp6g25520 Schrenkiella parvula HOM05D007734 ORTHO05D009807 1.5e-12 76.3 51 68.6
Sed0016523 Sechium edule HOM05D007734 ORTHO05D009807 1.5e-12 76.3 50 70.0
Glyma.07G252900 Glycine max HOM05D007734 ORTHO05D009807 1.9e-12 75.9 50 64.0
Prupe.1G145200 Prunus persica HOM05D007734 ORTHO05D009807 1.9e-12 75.9 50 68.0
TWI73G0877 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 1.9e-12 75.9 56 58.9
GSVIVG01017837001 Vitis vinifera HOM05D007734 ORTHO05D009807 1.9e-12 75.9 50 68.0
FvH4_4g16860 Fragaria vesca HOM05D007734 ORTHO05D009807 2.5e-12 75.5 51 60.8
FAN17G2648 Fragaria x ananassa HOM05D007734 ORTHO05D009807 2.5e-12 75.5 50 64.0
Psat4g030040 Pisum sativum HOM05D007734 ORTHO05D009807 2.5e-12 75.5 50 66.0
AT5G18850 Arabidopsis thaliana HOM05D007734 ORTHO05D009807 3.3e-12 75.1 49 63.3
Ca_30429_v3 Cicer arietinum L. HOM05D007734 ORTHO05D009807 3.3e-12 75.1 50 66.0
FAN12G0936 Fragaria x ananassa HOM05D007734 ORTHO05D009807 3.3e-12 75.1 50 62.0
FAN12G2573 Fragaria x ananassa HOM05D007734 ORTHO05D009807 3.3e-12 75.1 50 62.0
Dinv44448 Davidia involucrata HOM05D007734 ORTHO05D009807 4.3e-12 74.7 50 68.0
Carub.0006s1717 Capsella rubella HOM05D007734 ORTHO05D009807 5.6e-12 74.3 51 64.7
CARHR194160 Cardamine hirsuta HOM05D007734 ORTHO05D009807 5.6e-12 74.3 48 64.6
Peaxi162Scf00095g00125 Petunia axillaris HOM05D007734 ORTHO05D009807 5.6e-12 74.3 50 64.0
AL6G30210 Arabidopsis lyrata HOM05D007734 ORTHO05D009807 7.3e-12 73.9 49 63.3
arahy.Tifrunner.gnm1.ann1.80YKV9 Arachis hypogaea HOM05D007734 ORTHO05D009807 7.3e-12 73.9 50 66.0
arahy.Tifrunner.gnm1.ann1.F9B3QK Arachis hypogaea HOM05D007734 ORTHO05D009807 7.3e-12 73.9 50 66.0
BcaB01g05276 Brassica carinata HOM05D007734 ORTHO05D009807 7.3e-12 73.9 51 62.7
A03p09150 Brassica napus HOM05D007734 ORTHO05D009807 7.3e-12 73.9 51 62.7
C03p10680 Brassica napus HOM05D007734 ORTHO05D009807 7.3e-12 73.9 51 62.7
BolC3t13544H Brassica oleracea HOM05D007734 ORTHO05D009807 7.3e-12 73.9 51 62.7
BraA03t10238Z Brassica rapa HOM05D007734 ORTHO05D009807 7.3e-12 73.9 51 62.7
Thhalv10015120m.g Eutrema salsugineum HOM05D007734 ORTHO05D009807 9.6e-12 73.6 48 62.5
RcHm_v2.0_Chr4g0420431 Rosa chinensis HOM05D007734 ORTHO05D009807 9.6e-12 73.6 50 62.0
Nitab4.5_0009396g0030 Nicotiana tabacum HOM05D007734 ORTHO05D009807 1.2e-11 73.2 50 62.0
FAN22G2010 Fragaria x ananassa HOM05D007734 ORTHO05D001690 1.6e-11 72.8 49 63.3
Glyma.17G021500 Glycine max HOM05D007734 ORTHO05D009807 1.6e-11 72.8 50 62.0
Solyc01g080590.3 Solanum lycopersicum HOM05D007734 ORTHO05D009807 1.6e-11 72.8 44 72.7
Sopen01g032410 Solanum pennellii HOM05D007734 ORTHO05D009807 2.1e-11 72.4 44 72.7
Nitab4.5_0000059g0330 Nicotiana tabacum HOM05D007734 ORTHO05D009807 2.8e-11 72.0 47 66.0
Phvul.003G099200 Phaseolus vulgaris HOM05D007734 ORTHO05D009807 2.8e-11 72.0 50 60.0
BcaB01g04888 Brassica carinata HOM05D007734 ORTHO05D009807 4.7e-11 71.2 51 62.7
Lalb_Chr07g0177521 Lupinus albus HOM05D007734 ORTHO05D009807 4.7e-11 71.2 50 60.0
Sabra08G0163100 Salix brachista HOM05D007734 ORTHO05D009807 4.7e-11 71.2 50 66.0
PGSC0003DMG400032093 Solanum tuberosum HOM05D007734 ORTHO05D009807 4.7e-11 71.2 44 70.5
MSTRG.3964 Avicennia marina HOM05D007734 ORTHO05D009807 6.2e-11 70.9 43 69.8
Potri.010G026900 Populus trichocarpa HOM05D007734 ORTHO05D009807 8.1e-11 70.5 51 64.7
Oeu044804.1 Olea europaea HOM05D007734 ORTHO05D009807 1.1e-10 70.1 50 62.0
Manes.03G189200 Manihot esculenta HOM05D007734 ORTHO05D009807 1.8e-10 69.3 50 64.0
Potri.008G197300 Populus trichocarpa HOM05D007734 ORTHO05D009807 2.4e-10 68.9 50 64.0
THA.LOC104818832 Tarenaya hassleriana HOM05D002550 ORTHO05D003420 2.4e-10 68.9 56 57.1
Nn4g26101 Nelumbo nucifera HOM05D007734 ORTHO05D009807 4.0e-10 68.2 50 58.0
BcaB08g36639 Brassica carinata HOM05D007734 ORTHO05D009807 6.8e-10 67.4 41 68.3
MBI19_g13511_MAGBIO Magnolia biondii HOM05D007734 ORTHO05D009807 1.2e-09 66.6 65 46.2
Cc03_g02610 Coffea canephora HOM05D007734 ORTHO05D009807 1.5e-09 66.2 50 64.0
CSS0028590 Camellia sinensis var. sinensis HOM05D007734 ORTHO05D009807 4.4e-09 64.7 50 62.0
PSO302G0168 Papaver somniferum HOM05D007734 ORTHO05D009807 5.8e-09 64.3 50 52.0
TAR365G0453 Trochodendron aralioides HOM05D007734 ORTHO05D009807 5.8e-09 64.3 50 54.0
CDE05G0384 Ceratophyllum demersum HOM05D007734 ORTHO05D009807 2.9e-08 62.0 50 54.0
A10p20780 Brassica napus HOM05D007734 ORTHO05D009807 8.4e-08 60.5 50 56.0
ATR0487G018 Amborella trichopoda HOM05D007734 ORTHO05D009807 1.1e-07 60.1 52 53.8
Actinidia40206 Actinidia chinensis HOM05D007734 ORTHO05D009807 1.2e-06 56.6 50 56.0
SEGI_32711 Sequoiadendron giganteum HOM05D007734 ORTHO05D009807 3.5e-06 55.1 53 47.2


User provided reference genes

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