Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0003630 Simmondsia chinensis HOM05D007369 ORTHO05D009369 2.5e-167 592.0 303 100.0
Dinv38329 Davidia involucrata HOM05D007369 ORTHO05D009369 4.0e-56 222.6 360 41.9
Haze_01056 Corylus avellana HOM05D007369 ORTHO05D009369 6.6e-51 205.3 322 43.8
Cfa015498 Carpinus fangiana HOM05D007369 ORTHO05D009369 4.3e-50 202.6 325 43.4
Actinidia40222 Actinidia chinensis HOM05D007369 ORTHO05D009369 1.1e-48 198.0 359 39.6
Hma1.2p1_0078F.1_g040800 Hydrangea macrophylla HOM05D007369 ORTHO05D009369 5.3e-48 195.7 322 41.3
TAR636G2558 Trochodendron aralioides HOM05D007369 ORTHO05D009369 1.5e-47 194.1 371 40.4
QL06p007318 Quercus lobata HOM05D007369 ORTHO05D009369 5.8e-47 192.2 354 39.8
CiPaw.02G086900 Carya illinoinensis HOM05D007369 ORTHO05D009369 1.2e-44 184.5 321 40.8
Nn3g21294 Nelumbo nucifera HOM05D007369 ORTHO05D009369 2.3e-43 180.3 328 40.5
Potri.008G195300 Populus trichocarpa HOM05D007369 ORTHO05D009369 3.9e-43 179.5 321 40.5
Thecc.04G277200 Theobroma cacao HOM05D007369 ORTHO05D009369 3.9e-43 179.5 353 38.2
GSVIVG01017812001 Vitis vinifera HOM05D007369 ORTHO05D009369 1.9e-42 177.2 344 37.8
CSS0015973 Camellia sinensis var. sinensis HOM05D007369 ORTHO05D009369 2.5e-42 176.8 359 37.0
Duzib052G0382 Durio zibethinus HOM05D007369 ORTHO05D009369 8.1e-41 171.8 351 38.7
Gohir.D09G060700 Gossypium hirsutum HOM05D007369 ORTHO05D009369 8.1e-41 171.8 345 38.6
Gorai.006G075300 Gossypium raimondii HOM05D007369 ORTHO05D009369 3.1e-40 169.9 348 37.9
Dinv44429 Davidia involucrata HOM05D007369 ORTHO05D009369 7.6e-39 165.2 340 36.5
Aqoxy2G03087 Aquilegia oxysepala HOM05D007369 ORTHO05D009369 1.3e-38 164.5 255 42.7
Nn4g26033 Nelumbo nucifera HOM05D007369 ORTHO05D009369 1.7e-38 164.1 324 36.1
Actinidia23432 Actinidia chinensis HOM05D007369 ORTHO05D009369 2.9e-38 163.3 359 36.8
MD13G1174200 Malus domestica HOM05D007369 ORTHO05D009369 3.8e-38 162.9 336 38.1
RcHm_v2.0_Chr4g0420931 Rosa chinensis HOM05D007369 ORTHO05D009369 3.8e-38 162.9 313 41.5
Rhsim04G0215900 Rhododendron simsii HOM05D007369 ORTHO05D009369 2.4e-37 160.2 370 35.7
Gohir.A09G061800 Gossypium hirsutum HOM05D007369 ORTHO05D009369 7.1e-37 158.7 344 36.3
Prupe.1G142600 Prunus persica HOM05D007369 ORTHO05D009369 9.3e-37 158.3 344 36.3
ATR0706G035 Amborella trichopoda HOM05D007369 ORTHO05D009369 1.0e-35 154.8 297 38.0
Manes.15G017400 Manihot esculenta HOM05D007369 ORTHO05D009369 1.3e-35 154.5 357 35.0
FvH4_4g17160 Fragaria vesca HOM05D007369 ORTHO05D009369 1.8e-35 154.1 310 39.0
FAN12G1425 Fragaria x ananassa HOM05D007369 ORTHO05D009369 1.8e-35 154.1 310 39.0
FAN12G3176 Fragaria x ananassa HOM05D007369 ORTHO05D009369 1.8e-35 154.1 310 39.0
Manes.03G190800 Manihot esculenta HOM05D007369 ORTHO05D009369 3.9e-35 152.9 288 38.9
Ciclev10005057m.g Citrus clementina HOM05D007369 ORTHO05D009369 2.1e-33 147.1 351 34.2
Nitab4.5_0003067g0040 Nicotiana tabacum HOM05D007369 ORTHO05D009369 2.0e-31 140.6 282 35.5
Peaxi162Scf00386g00219 Petunia axillaris HOM05D007369 ORTHO05D009369 2.6e-31 140.2 267 37.5
Cc03_g02400 Coffea canephora HOM05D007369 ORTHO05D009369 1.7e-30 137.5 306 34.3
CANSAT78G0356 Cannabis sativa HOM05D007369 ORTHO05D009369 2.9e-30 136.7 332 34.3
FAN07G2486 Fragaria x ananassa HOM05D007369 ORTHO05D009369 2.9e-30 136.7 316 36.7
SalBow2G2600 Salvia bowleyana HOM05D007369 ORTHO05D009369 4.9e-30 136.0 317 33.1
CsaV3_3G014100 Cucumis sativus L. HOM05D007369 ORTHO05D009369 6.5e-30 135.6 282 35.5
TPR.G37368 Trifolium pratense HOM05D007369 ORTHO05D009369 6.5e-30 135.6 355 34.1
Glyma.13G214800 Glycine max HOM05D007369 ORTHO05D009369 1.1e-29 134.8 354 33.9
Oeu044796.2 Olea europaea HOM05D007369 ORTHO05D009369 1.4e-29 134.4 351 30.8
Lalb_Chr18g0055751 Lupinus albus HOM05D007369 ORTHO05D009369 2.5e-29 133.7 354 31.9
Oeu062882.1 Olea europaea HOM05D007369 ORTHO05D009369 3.2e-29 133.3 287 34.5
Sed0026345 Sechium edule HOM05D007369 ORTHO05D009369 7.1e-29 132.1 311 33.4
FAN17G0929 Fragaria x ananassa HOM05D007369 ORTHO05D009369 4.6e-28 129.4 314 36.6
COL.COLO4_13933 Corchorus olitorius HOM05D007369 ORTHO05D009369 7.9e-28 128.6 379 32.5
MBI19_g37517_MAGBIO Magnolia biondii HOM05D007369 ORTHO05D009369 7.9e-28 128.6 330 31.5
Sabra08G0148500 Salix brachista HOM05D007369 ORTHO05D009369 1.3e-27 127.9 146 50.7
Glyma.15G098300 Glycine max HOM05D007369 ORTHO05D009369 3.0e-27 126.7 324 34.0
Ca_17638_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 1.5e-26 124.4 407 30.7
Hund24911 Selenicereus undatus HOM05D007369 ORTHO05D009369 1.5e-26 124.4 324 33.3
Atru.chr4.2749 Acer truncatum HOM05D007369 ORTHO05D009369 1.9e-26 124.0 111 58.6
Phvul.006G161000 Phaseolus vulgaris HOM05D007369 ORTHO05D009369 2.5e-26 123.6 354 32.8
CAN.G223.8 Capsicum annuum HOM05D007369 ORTHO05D009369 3.3e-26 123.2 354 31.9
Solyc01g067700.3 Solanum lycopersicum HOM05D007369 ORTHO05D009369 4.3e-26 122.9 271 35.1
arahy.Tifrunner.gnm1.ann1.ED76E0 Arachis hypogaea HOM05D007369 ORTHO05D009369 7.4e-26 122.1 363 33.6
arahy.Tifrunner.gnm1.ann1.IR05CW Arachis hypogaea HOM05D007369 ORTHO05D009369 1.6e-25 120.9 377 32.6
Potri.010G031250 Populus trichocarpa HOM05D007369 ORTHO05D009369 1.6e-25 120.9 125 54.4
LjContig00389g0017607 Lotus japonicus HOM05D007369 ORTHO05D009369 2.2e-25 120.6 340 33.2
ClCG05G005770 Citrullus lanatus HOM05D007369 ORTHO05D009369 1.1e-24 118.2 266 33.8
Sopen01g029630 Solanum pennellii HOM05D007369 ORTHO05D009369 1.4e-24 117.9 353 30.3
VMungo0540G1702 Vigna mungo HOM05D007369 ORTHO05D009369 1.4e-24 117.9 356 32.9
Medtr8g093650 Medicago truncatula HOM05D007369 ORTHO05D009369 2.0e-23 114.0 385 28.1
FAN22G0049 Fragaria x ananassa HOM05D007369 ORTHO05D009369 2.6e-23 113.6 309 34.3
Duzib151G0340 Durio zibethinus HOM05D007369 ORTHO05D009369 1.3e-22 111.3 331 31.7
Nitab4.5_0000197g0120 Nicotiana tabacum HOM05D007369 ORTHO05D009369 1.1e-21 108.2 265 31.7
Ca_00577_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 1.4e-21 107.8 283 33.2
Psat1g187040 Pisum sativum HOM05D007369 ORTHO05D009369 3.2e-21 106.7 413 27.4
DCAR_002440 Daucus carota HOM05D007369 ORTHO05D009369 4.2e-21 106.3 253 34.8
SGA_v2.0_scaffold57G20253 Striga asiatica HOM05D007369 ORTHO05D009369 1.2e-20 104.8 302 30.8
ECA240G2128 Erigeron canadensis HOM05D007369 ORTHO05D009369 1.6e-20 104.4 226 34.5
Migut.G00214 Erythranthe guttata HOM05D007369 ORTHO05D009369 1.6e-20 104.4 117 47.9
Eucgr.B01264 Eucalyptus grandis HOM05D007369 ORTHO05D009369 3.6e-20 103.2 329 30.4
TWI73G1273 Tripterygium wilfordii HOM05D007369 ORTHO05D009369 6.1e-20 102.4 100 54.0
Mapoly0126s0031 Marchantia polymorpha HOM05D007369 ORTHO05D009369 1.5e-18 97.8 289 30.4
MELO3C031713.2 Cucumis melo HOM05D007369 ORTHO05D009369 5.7e-18 95.9 269 30.5
THA.LOC104820236 Tarenaya hassleriana HOM05D007369 ORTHO05D009369 7.4e-18 95.5 211 33.2
vmacro08206 Vaccinium macrocarpon HOM05D007369 ORTHO05D009369 1.8e-16 90.9 350 29.7
HanXRQChr03g0080111 Helianthus annuus HOM05D007369 ORTHO05D009369 5.3e-16 89.4 206 32.0
FAN17G3125 Fragaria x ananassa HOM05D007369 ORTHO05D009369 6.9e-16 89.0 70 61.4
AagrBONN_evm.TU.Sc2ySwM_362.2687 Anthoceros agrestis HOM05D007369 ORTHO05D009369 1.3e-14 84.7 66 59.1
TAR365G0645 Trochodendron aralioides HOM05D007369 ORTHO05D009369 2.6e-10 70.5 182 31.9
Zm00001eb410560 Zea mays HOM05D007369 ORTHO05D009369 2.6e-10 70.5 294 27.9
Lalb_Chr20g0118161 Lupinus albus HOM05D007369 ORTHO05D009369 7.4e-10 68.9 180 32.2
MD16G1175700 Malus domestica HOM05D007369 ORTHO05D009369 7.4e-10 68.9 36 80.6
Atru.chr4.2750 Acer truncatum HOM05D007369 ORTHO05D009369 1.3e-09 68.2 164 31.7
MD16G1175600 Malus domestica HOM05D007369 ORTHO05D009369 1.7e-06 57.8 67 52.2


User provided reference genes

Program Settings