Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 1.9e-231 805.4 402 100.0
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 6.8e-136 488.0 408 60.3
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 4.1e-133 478.8 402 59.0
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 1.0e-131 474.2 402 58.5
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 1.1e-130 470.7 401 59.1
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 5.6e-130 468.4 400 60.2
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 5.6e-130 468.4 403 57.3
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.3e-126 457.2 399 58.9
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 2.9e-126 456.1 413 56.9
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 3.7e-126 455.7 403 56.6
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 6.4e-126 454.9 324 64.5
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 1.9e-125 453.4 317 65.9
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 4.1e-125 452.2 404 55.2
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 1.2e-124 450.7 413 55.9
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 2.7e-124 449.5 323 65.6
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 4.6e-124 448.7 317 65.0
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 1.3e-123 447.2 325 64.9
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 8.6e-123 444.5 406 55.7
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 8.6e-123 444.5 316 65.8
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 1.9e-122 443.4 394 58.4
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.5e-122 443.0 317 65.6
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 4.3e-122 442.2 320 63.4
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 4.3e-122 442.2 403 56.6
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 5.6e-122 441.8 379 57.3
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 7.3e-122 441.4 403 56.3
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 9.5e-122 441.0 318 64.5
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 2.8e-121 439.5 318 64.2
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 3.6e-121 439.1 371 60.4
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.1e-120 437.6 334 62.0
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 1.4e-120 437.2 359 58.8
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.3e-120 436.4 318 64.8
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 4.0e-120 435.6 321 62.0
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 8.9e-120 434.5 348 60.3
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 8.9e-120 434.5 319 65.8
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 1.2e-119 434.1 318 64.8
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 1.5e-119 433.7 327 60.9
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 2.0e-119 433.3 387 58.9
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.6e-119 433.0 321 61.7
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.6e-119 433.0 386 58.0
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 5.8e-119 431.8 319 62.7
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 1.7e-118 430.3 365 57.0
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 4.9e-118 428.7 406 53.0
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 8.4e-118 427.9 335 60.0
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 1.1e-117 427.6 405 56.0
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.4e-117 427.2 318 64.2
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 2.4e-117 426.4 370 55.4
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.4e-117 426.4 394 56.9
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 3.2e-117 426.0 327 60.6
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 7.1e-117 424.9 327 60.9
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 7.1e-117 424.9 309 64.1
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.1e-116 423.3 327 60.2
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 2.7e-116 422.9 339 58.4
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 4.6e-116 422.2 406 53.4
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 4.6e-116 422.2 395 55.4
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 6.0e-116 421.8 327 59.9
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 6.0e-116 421.8 327 59.9
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 1.3e-115 420.6 312 62.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.3e-115 419.9 331 60.1
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.3e-115 419.9 340 58.8
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.3e-115 419.9 339 58.7
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 3.9e-115 419.1 342 58.2
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 8.6e-115 417.9 344 57.3
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 1.1e-114 417.5 327 59.3
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.1e-114 417.5 402 54.0
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.5e-114 416.4 340 58.2
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 3.3e-114 416.0 399 54.9
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 5.6e-114 415.2 346 58.1
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 7.3e-114 414.8 404 53.0
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 7.3e-114 414.8 320 63.1
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.1e-113 413.3 413 54.7
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 2.8e-113 412.9 399 55.1
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 3.6e-113 412.5 369 54.2
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 4.7e-113 412.1 331 58.3
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 8.1e-113 411.4 399 53.4
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 1.4e-112 410.6 318 61.6
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 4.0e-112 409.1 369 54.2
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 5.2e-112 408.7 356 57.3
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 1.5e-111 407.1 305 61.0
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 2.0e-111 406.8 466 49.1
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 2.6e-111 406.4 408 52.0
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 3.4e-111 406.0 318 61.0
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 9.9e-111 404.4 321 61.4
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.8e-110 402.5 332 58.4
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 1.9e-109 400.2 329 58.4
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 9.6e-106 387.9 319 55.5
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 4.0e-104 382.5 401 50.6
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 2.6e-103 379.8 325 56.0
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.2e-102 376.7 342 56.4
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 8.4e-102 374.8 331 58.3
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 8.4e-102 374.8 313 55.6
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 2.4e-101 373.2 326 54.3
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 2.1e-100 370.2 334 53.0
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.0e-99 367.9 329 56.5
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.1e-98 364.4 330 51.8
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 4.8e-97 359.0 314 53.8
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 6.2e-97 358.6 312 53.8
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 5.3e-96 355.5 225 71.1
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 6.9e-96 355.1 360 48.3
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.2e-95 354.4 296 55.4
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 6.4e-94 348.6 321 53.6
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 8.4e-94 348.2 318 51.6
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 8.7e-91 338.2 278 64.4
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 2.6e-87 326.6 313 49.2
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 2.9e-86 323.2 223 66.4
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 3.8e-86 322.8 411 46.2
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 5.7e-82 308.9 341 48.4
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 6.3e-81 305.4 267 55.1
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.4e-79 299.7 227 61.7
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 2.2e-78 297.0 229 59.8
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 5.5e-77 292.4 278 54.7
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 9.7e-74 281.6 284 54.6
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 3.7e-73 279.6 288 50.3
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 1.3e-70 271.2 322 45.7
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.0e-54 218.4 352 40.3
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 5.0e-54 216.1 188 56.4
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 5.9e-47 192.6 266 39.5
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.2e-43 179.5 132 63.6
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 4.8e-41 172.9 122 63.1
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 6.5e-38 162.5 314 29.3
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 2.5e-37 160.6 186 46.2
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 9.5e-37 158.7 182 44.0
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.2e-36 158.3 123 61.0
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 5.2e-35 152.9 302 32.5
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 2.0e-26 124.4 148 42.6
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 1.4e-24 118.2 77 67.5
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 7.0e-24 115.9 213 32.9
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 1.2e-23 115.2 86 64.0
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 1.3e-22 111.7 284 26.4
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 1.7e-22 111.3 112 50.9
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.3e-21 107.1 68 67.6
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.8e-19 101.3 246 26.0
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 1.2e-18 98.6 111 45.0
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.4e-18 96.7 87 52.9
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.9e-16 91.3 90 48.9
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 3.5e-15 87.0 84 53.6
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.2e-10 72.0 162 31.5
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.2e-10 72.0 162 31.5
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 5.8e-10 69.7 70 51.4
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 9.9e-10 68.9 299 21.7
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.6e-07 60.1 38 60.5


User provided reference genes

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