Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 8.5e-207 723.4 357 100.0
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.5e-139 500.0 345 72.5
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 6.5e-138 494.6 328 73.2
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 1.6e-136 490.0 335 70.1
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.3e-133 480.3 330 72.1
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.5e-123 446.8 399 57.1
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.1e-120 436.4 330 62.1
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 1.5e-118 430.3 350 58.0
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 3.1e-116 422.5 343 58.9
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 1.0e-114 417.5 348 59.2
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 1.3e-114 417.2 332 59.0
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 3.8e-114 415.6 331 59.2
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 5.0e-114 415.2 331 60.4
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.1e-113 414.1 349 56.7
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 4.2e-113 412.1 361 56.2
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.8e-111 406.8 353 54.1
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 2.3e-111 406.4 352 57.4
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 2.3e-111 406.4 352 57.4
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 5.2e-111 405.2 347 55.6
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 5.2e-111 405.2 349 55.9
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 1.5e-110 403.7 357 54.9
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 9.7e-110 401.0 360 56.1
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 2.2e-109 399.8 351 55.0
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 2.8e-109 399.4 365 55.9
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 2.8e-109 399.4 351 56.4
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 2.8e-109 399.4 352 56.5
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 1.8e-108 396.7 361 55.1
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.7e-106 390.2 354 54.8
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 2.2e-106 389.8 339 56.6
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 1.9e-105 386.7 326 57.1
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 5.5e-105 385.2 347 55.6
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 5.5e-105 385.2 358 55.0
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.6e-104 382.5 347 55.6
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 3.6e-104 382.5 345 54.8
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 4.7e-104 382.1 346 55.5
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 3.0e-103 379.4 357 53.2
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 1.7e-101 373.6 336 55.7
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 6.3e-101 371.7 330 55.8
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 1.4e-100 370.5 345 54.2
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 1.8e-100 370.2 379 51.5
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 4.1e-100 369.0 332 54.5
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 9.1e-100 367.9 345 55.1
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 3.5e-99 365.9 363 52.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 4.5e-99 365.5 330 55.5
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 1.7e-98 363.6 338 52.4
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 2.2e-98 363.2 345 53.0
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 2.9e-98 362.8 329 54.1
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 8.5e-98 361.3 327 53.8
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 1.1e-97 360.9 350 50.9
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 1.5e-97 360.5 345 53.6
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 7.2e-97 358.2 352 51.7
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 2.1e-96 356.7 329 53.5
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 6.1e-96 355.1 325 54.2
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 6.1e-96 355.1 325 54.2
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 8.0e-96 354.8 357 51.5
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 2.0e-94 350.1 325 53.2
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 3.4e-94 349.4 330 50.9
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 5.7e-94 348.6 358 50.0
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 5.7e-94 348.6 351 51.0
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 1.7e-93 347.1 352 50.6
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 1.7e-93 347.1 352 50.6
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 4.8e-93 345.5 346 51.2
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 6.3e-93 345.1 342 49.7
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 8.3e-93 344.7 352 50.6
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 1.2e-91 340.9 351 48.7
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 1.6e-91 340.5 351 50.7
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 5.9e-91 338.6 344 49.7
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 5.9e-91 338.6 354 49.2
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 1.0e-90 337.8 347 48.1
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 5.0e-90 335.5 349 47.9
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 2.5e-89 333.2 327 50.5
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 1.6e-88 330.5 422 42.9
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 2.3e-87 326.6 285 55.1
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 2.6e-86 323.2 324 49.7
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 8.6e-82 308.1 248 58.5
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 1.1e-81 307.8 329 46.8
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.6e-80 303.9 248 58.9
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 6.8e-79 298.5 332 45.8
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.5e-78 297.4 304 48.7
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 9.8e-78 294.7 249 55.4
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.4e-76 290.0 220 62.3
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.9e-73 280.4 310 42.9
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 6.2e-72 275.4 352 44.9
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.4e-70 269.6 249 50.6
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 3.4e-70 269.6 249 52.2
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 1.4e-68 264.2 327 40.7
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 4.6e-67 259.2 327 42.2
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 6.6e-66 255.4 278 49.6
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 1.6e-64 250.8 243 51.9
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 4.7e-64 249.2 220 53.6
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 6.4e-61 238.8 210 54.3
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 2.7e-59 233.4 238 49.6
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 3.4e-54 216.5 256 44.9
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 3.4e-54 216.5 206 52.4
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 2.2e-53 213.8 221 44.8
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 2.8e-48 196.8 215 48.4
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 3.5e-43 179.9 358 34.9
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.9e-28 131.0 126 50.8
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.7e-27 127.1 85 69.4
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 3.0e-26 123.6 85 68.2
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 4.8e-24 116.3 122 50.0
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 8.2e-24 115.5 132 49.2
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.4e-23 114.8 330 30.3
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 5.8e-22 109.4 330 26.4
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 4.5e-14 83.2 380 22.4
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 2.2e-13 80.9 92 40.2
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.2e-12 77.0 358 23.7
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 3.2e-12 77.0 81 48.1
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.3e-10 71.6 324 23.5
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 4.8e-08 63.2 151 27.2
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.4e-07 60.8 100 32.0
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.5e-06 56.6 125 28.8


User provided reference genes

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