Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1305.8 650 100.0
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 3.4e-230 802.0 641 61.3
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 3.2e-228 795.4 637 60.9
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 7.2e-228 794.3 658 61.4
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 3.3e-225 785.4 641 60.2
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 6.3e-224 781.2 639 61.0
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 9.1e-223 777.3 674 58.2
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 1.5e-222 776.5 640 60.8
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 3.8e-221 771.9 584 63.2
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 1.4e-220 770.0 647 59.5
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 2.3e-218 762.7 641 59.0
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 3.0e-218 762.3 639 59.5
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 5.7e-217 758.1 597 62.1
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 7.4e-217 757.7 596 61.7
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 2.2e-216 756.1 667 56.4
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 1.6e-214 750.0 642 59.3
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 1.7e-213 746.5 642 58.1
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.9e-212 743.0 550 64.7
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 1.9e-212 743.0 643 57.2
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 2.5e-212 742.7 624 57.7
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 5.5e-212 741.5 588 60.7
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 2.7e-211 739.2 637 57.8
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 8.0e-211 737.6 639 57.7
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 5.7e-209 731.5 631 57.5
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 7.5e-209 731.1 591 60.9
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 2.8e-208 729.2 652 56.7
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 2.8e-208 729.2 653 57.0
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 3.7e-208 728.8 646 56.2
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 6.3e-208 728.0 641 55.5
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 8.2e-208 727.6 586 59.9
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.8e-207 726.5 629 57.6
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.1e-207 725.7 652 57.2
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 7.0e-207 724.5 599 59.8
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 7.0e-207 724.5 599 59.8
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 1.2e-206 723.8 656 55.8
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 2.7e-206 722.6 643 55.5
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 2.7e-206 722.6 637 55.3
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 2.7e-206 722.6 637 55.3
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.7e-205 719.9 599 59.4
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.9e-204 716.5 589 58.2
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.9e-204 716.5 592 59.0
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 2.5e-204 716.1 639 55.2
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 1.6e-203 713.4 612 56.7
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 2.7e-203 712.6 604 57.1
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 3.6e-203 712.2 638 54.1
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 1.0e-202 710.7 604 57.5
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 3.0e-202 709.1 638 55.6
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 1.2e-201 707.2 603 57.7
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 1.5e-201 706.8 605 57.5
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 2.0e-201 706.4 638 54.4
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 1.8e-199 699.9 584 58.7
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 2.4e-199 699.5 637 55.1
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 3.1e-199 699.1 636 53.6
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 1.2e-198 697.2 594 59.6
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 4.5e-198 695.3 604 57.0
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 5.9e-198 694.9 578 59.2
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 1.7e-197 693.3 650 55.1
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 1.7e-197 693.3 649 53.8
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 1.1e-196 690.6 578 59.3
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 3.3e-196 689.1 610 55.9
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 2.1e-195 686.4 638 54.7
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 6.1e-195 684.9 642 55.1
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 5.2e-194 681.8 580 56.6
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 2.4e-191 672.9 583 56.6
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 4.3e-188 662.1 653 53.4
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 3.6e-187 659.1 647 53.3
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 1.2e-185 654.1 599 54.1
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 3.4e-185 652.5 600 54.8
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 6.0e-182 641.7 602 53.5
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 2.8e-179 632.9 587 54.3
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 1.8e-178 630.2 602 52.8
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.0e-177 626.7 596 55.2
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 2.2e-176 623.2 601 52.2
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 1.9e-175 620.2 595 52.3
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 1.9e-175 620.2 595 52.3
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 1.9e-175 620.2 595 52.3
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.3e-173 614.0 547 54.7
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 1.7e-173 613.6 596 51.7
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 3.0e-173 612.8 581 53.4
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 1.1e-172 610.9 599 50.3
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 1.4e-170 604.0 545 54.1
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 5.2e-170 602.1 551 54.3
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 1.3e-168 597.4 417 68.6
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 4.6e-158 562.4 526 55.3
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 5.6e-156 555.4 643 45.7
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 1.1e-154 551.2 609 47.5
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 1.2e-153 547.7 638 45.9
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 1.2e-153 547.7 471 58.6
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 6.6e-149 531.9 686 44.0
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 7.3e-148 528.5 413 63.0
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 5.3e-146 522.3 415 61.7
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.3e-139 501.1 591 44.5
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 5.1e-133 479.2 659 40.1
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 3.9e-117 426.4 366 57.7
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 2.6e-113 413.7 641 39.3
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 4.7e-110 402.9 370 54.3
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.8e-107 393.7 263 70.3
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 9.4e-95 352.1 337 51.6
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 4.2e-79 300.1 218 63.8
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 3.5e-73 280.4 227 57.7
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 2.1e-70 271.2 214 63.1
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 6.8e-69 266.2 231 55.0
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.1e-61 240.7 575 29.2
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.3e-53 214.5 200 56.0
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.4e-52 210.7 200 56.0
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 5.8e-52 209.9 200 56.0
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 2.8e-46 191.0 189 50.3
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 8.1e-46 189.5 184 53.8
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.0e-45 187.2 508 28.3
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 2.4e-42 177.9 129 63.6
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 5.1e-40 170.2 206 42.7
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 3.1e-37 161.0 165 44.8
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 2.6e-36 157.9 492 24.4
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 8.7e-32 142.9 135 54.8
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 4.0e-29 134.0 134 53.7
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 5.3e-29 133.7 115 53.9
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 2.2e-27 128.3 126 52.4
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.0e-24 117.9 368 26.6
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 5.3e-21 107.1 84 56.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 2.6e-20 104.8 84 56.0
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.1e-16 90.5 499 23.2
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.8e-14 84.7 227 25.1
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 1.4e-13 82.4 77 50.6
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 4.5e-12 77.4 58 62.1
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.3e-11 75.9 58 60.3
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.5e-09 67.8 57 54.4
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 7.9e-09 66.6 86 41.9
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 3.0e-08 64.7 43 65.1
Sc12g0008580 Simmondsia chinensis HOM05D005069 ORTHO05D006024 6.7e-08 63.5 36 75.0
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 7.4e-07 60.1 45 57.8
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.3e-06 59.3 45 57.8
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.6e-06 58.9 58 48.3


User provided reference genes

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