Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 7.5e-145 517.3 287 100.0
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 4.9e-104 381.7 293 71.0
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 2.1e-102 376.3 292 70.5
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 1.1e-98 364.0 297 69.7
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 4.0e-98 362.1 295 69.2
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 9.9e-97 357.5 292 66.8
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 1.0e-93 347.4 289 68.2
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 1.3e-93 347.1 284 68.0
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 5.1e-93 345.1 293 67.2
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 2.5e-92 342.8 293 66.6
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 2.5e-92 342.8 372 57.3
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 3.3e-92 342.4 283 66.8
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 3.3e-92 342.4 294 66.3
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 7.3e-92 341.3 294 66.3
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 7.3e-92 341.3 296 64.9
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.6e-91 340.1 293 64.8
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 1.6e-91 340.1 288 67.7
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 2.8e-91 339.3 293 65.5
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 4.8e-91 338.6 258 71.7
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 6.2e-91 338.2 294 65.6
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 8.1e-91 337.8 294 66.7
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.1e-90 337.4 292 65.1
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.4e-90 337.0 294 66.3
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 1.8e-90 336.7 295 65.1
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 3.1e-90 335.9 294 65.0
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 3.1e-90 335.9 261 70.5
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 4.0e-90 335.5 294 65.6
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 4.0e-90 335.5 294 65.6
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 9.0e-90 334.3 291 64.6
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.2e-89 334.0 292 64.7
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.5e-89 333.6 293 64.8
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 2.0e-89 333.2 295 64.7
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 2.6e-89 332.8 295 64.1
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 3.4e-89 332.4 262 69.1
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.4e-89 332.4 292 64.4
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.6e-89 331.3 292 64.4
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 9.9e-89 330.9 292 64.0
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 9.9e-89 330.9 287 65.2
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.7e-88 330.1 296 63.9
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 2.9e-88 329.3 292 63.7
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 3.8e-88 328.9 262 69.5
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 4.9e-88 328.6 295 64.4
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 6.4e-88 328.2 299 65.2
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 1.4e-87 327.0 285 64.9
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.4e-87 327.0 294 64.6
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 5.4e-87 325.1 295 63.7
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 5.4e-87 325.1 295 63.4
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 9.3e-87 324.3 312 61.5
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.3e-85 320.5 296 62.8
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.9e-85 318.9 297 63.0
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 5.1e-85 318.5 255 69.0
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 8.7e-85 317.8 296 62.5
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 9.6e-84 314.3 257 68.1
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 2.1e-83 313.2 320 59.7
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 2.1e-83 313.2 290 62.4
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 6.2e-83 311.6 301 59.5
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.1e-82 310.8 290 61.4
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 1.1e-82 310.8 290 61.4
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.1e-82 310.8 259 66.8
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 1.8e-82 310.1 304 60.2
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 2.4e-82 309.7 291 61.5
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 2.4e-82 309.7 291 61.5
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 3.1e-82 309.3 290 62.4
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 4.0e-82 308.9 275 64.0
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 6.9e-82 308.1 292 62.0
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 6.9e-82 308.1 291 61.2
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 1.5e-81 307.0 294 61.6
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 1.5e-81 307.0 297 61.3
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.0e-81 306.6 329 56.8
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 7.6e-81 304.7 259 66.8
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.3e-80 303.9 293 60.4
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 3.8e-80 302.4 292 59.6
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 4.9e-80 302.0 295 60.0
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 6.4e-80 301.6 251 66.1
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 1.4e-79 300.4 294 60.2
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 1.9e-79 300.1 263 64.3
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.9e-79 300.1 253 65.6
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 3.2e-79 299.3 359 53.8
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 7.1e-79 298.1 251 65.7
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 1.2e-78 297.4 281 59.8
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 1.6e-78 297.0 290 60.3
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 1.6e-78 297.0 294 60.2
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 3.5e-78 295.8 290 60.3
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 4.6e-78 295.4 302 60.3
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 3.0e-77 292.7 320 56.9
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 3.0e-77 292.7 254 63.4
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 4.3e-76 288.9 261 61.7
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 4.3e-76 288.9 293 58.4
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 5.6e-76 288.5 262 64.1
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.6e-75 287.0 298 58.4
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.1e-75 286.6 250 63.6
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 2.8e-75 286.2 293 58.0
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 1.1e-74 284.3 293 58.4
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 2.4e-74 283.1 385 47.5
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 4.0e-74 282.3 309 55.0
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 9.0e-74 281.2 294 57.8
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 2.9e-72 276.2 213 71.4
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 3.8e-72 275.8 295 61.4
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 4.9e-72 275.4 294 57.1
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 7.1e-71 271.6 259 62.5
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 2.7e-70 269.6 388 46.9
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.9e-68 263.5 295 55.3
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 5.9e-65 251.9 238 62.6
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 2.2e-64 250.0 219 65.8
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 1.4e-63 247.3 293 53.9
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.2e-62 244.2 249 55.0
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.1e-60 237.7 230 60.4
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.8e-59 233.0 198 68.2
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 2.9e-56 223.0 292 51.7
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.4e-53 214.2 213 59.6
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 2.3e-53 213.4 174 67.2
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 2.6e-52 209.9 184 67.4
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 3.8e-48 196.1 142 82.4
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.1e-46 190.3 239 46.0
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.7e-46 189.9 239 46.0
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 8.0e-46 188.3 273 45.1
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 1.0e-45 188.0 183 59.6
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 5.3e-42 175.6 246 42.7
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 7.0e-42 175.3 231 44.2
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 9.1e-42 174.9 125 76.8
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.7e-38 163.3 242 38.8
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 1.4e-37 161.0 162 58.0
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 8.5e-32 141.7 229 41.0
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.0e-29 134.8 114 68.4
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 6.8e-29 132.1 179 49.7
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 2.6e-28 130.2 174 47.1
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 4.4e-28 129.4 233 36.1
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 4.8e-27 125.9 119 63.0
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 2.4e-26 123.6 130 55.4
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 2.4e-26 123.6 118 55.1
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 9.5e-23 111.7 96 67.7
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.0e-21 108.2 105 55.2
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 1.0e-21 108.2 105 55.2
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 2.0e-20 104.0 130 45.4
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 5.7e-20 102.4 105 53.3
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 6.6e-16 89.0 100 53.0
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 2.3e-13 80.5 62 64.5
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 4.6e-09 66.2 49 65.3
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 4.6e-09 66.2 49 65.3
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 4.6e-09 66.2 49 65.3
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 4.6e-09 66.2 49 65.3
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 1.3e-08 64.7 182 25.3
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 1.9e-07 60.8 189 30.2
MCO03G437 Micromonas commoda HOM05D005102 ORTHO05D006090 9.5e-07 58.5 179 29.6


User provided reference genes

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