Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0002870 Simmondsia chinensis HOM05D000029 ORTHO05D000372 4.2e-30 134.0 68 100.0
Sc13g0002880 Simmondsia chinensis HOM05D000029 ORTHO05D002162 5.2e-20 100.5 54 94.4
Hund19255 Selenicereus undatus HOM05D000029 ORTHO05D002162 2.0e-16 88.6 54 77.8
AUR62035318 Chenopodium quinoa HOM05D000002 ORTHO05D000001 3.6e-13 77.8 56 69.6
AUR62035933 Chenopodium quinoa HOM05D000029 ORTHO05D002162 3.6e-13 77.8 56 69.6
Ah.04g153350 Amaranthus hybridus HOM05D000029 ORTHO05D002162 1.4e-12 75.9 52 69.2
Nitab4.5_0008702g0010 Nicotiana tabacum HOM05D000029 ORTHO05D002162 2.3e-12 75.1 53 69.8
FAN12G1436 Fragaria x ananassa HOM05D000029 ORTHO05D002162 3.0e-12 74.7 53 69.8
FAN12G4189 Fragaria x ananassa HOM05D000029 ORTHO05D002162 3.0e-12 74.7 53 69.8
Solyc09g091260.3 Solanum lycopersicum HOM05D000029 ORTHO05D002162 4.0e-12 74.3 53 69.8
Sopen09g034230 Solanum pennellii HOM05D000029 ORTHO05D002162 4.0e-12 74.3 53 69.8
PGSC0003DMG400011580 Solanum tuberosum HOM05D000029 ORTHO05D002162 4.0e-12 74.3 53 69.8
FvH4_4g05590 Fragaria vesca HOM05D000029 ORTHO05D002162 1.2e-11 72.8 53 67.9
Dinv38287 Davidia involucrata HOM05D000029 ORTHO05D002162 1.5e-11 72.4 53 69.8
Nitab4.5_0002182g0040 Nicotiana tabacum HOM05D000029 ORTHO05D002162 1.5e-11 72.4 53 67.9
CAN.G1588.12 Capsicum annuum HOM05D000029 ORTHO05D002162 2.6e-11 71.6 53 67.9
Dinv27153 Davidia involucrata HOM05D000029 ORTHO05D002162 4.4e-11 70.9 53 66.0
TAR636G0669 Trochodendron aralioides HOM05D000029 ORTHO05D002162 4.4e-11 70.9 54 63.0
COL.COLO4_33228 Corchorus olitorius HOM05D000029 ORTHO05D002162 9.8e-11 69.7 62 61.3
Lj6A643T68 Lonicera japonica HOM05D000489 ORTHO05D000372 1.7e-10 68.9 53 64.2
Atru.chr4.1809 Acer truncatum HOM05D000029 ORTHO05D002162 2.2e-10 68.6 53 66.0
Thecc.04G213700 Theobroma cacao HOM05D000029 ORTHO05D002162 2.2e-10 68.6 53 66.0
Manes.03G154400 Manihot esculenta HOM05D000029 ORTHO05D002162 3.7e-10 67.8 53 66.0
Potri.001G053400 Populus trichocarpa HOM05D000029 ORTHO05D002162 3.7e-10 67.8 55 63.6
RcHm_v2.0_Chr4g0396751 Rosa chinensis HOM05D000029 ORTHO05D002162 4.8e-10 67.4 53 66.0
EL10Ac3g06776 Beta vulgaris HOM05D000029 ORTHO05D002162 8.3e-10 66.6 55 61.8
vmacro22824 Vaccinium macrocarpon HOM05D000029 ORTHO05D002162 8.3e-10 66.6 53 64.2
vmacro23456 Vaccinium macrocarpon HOM05D000029 ORTHO05D002162 8.3e-10 66.6 53 64.2
MELO3C006343.2 Cucumis melo HOM05D000029 ORTHO05D002162 1.1e-09 66.2 54 66.7
CsaV3_3G011350 Cucumis sativus L. HOM05D000029 ORTHO05D002162 1.1e-09 66.2 54 66.7
FAN17G2451 Fragaria x ananassa HOM05D000029 ORTHO05D002162 1.1e-09 66.2 53 66.0
Hma1.2p1_0903F.1_g235060 Hydrangea macrophylla HOM05D000029 ORTHO05D002162 1.1e-09 66.2 55 67.3
Dinv44409 Davidia involucrata HOM05D000029 ORTHO05D002162 1.4e-09 65.9 53 64.2
Dinv44412 Davidia involucrata HOM05D000029 ORTHO05D002162 1.4e-09 65.9 53 64.2
Manes.15G049300 Manihot esculenta HOM05D000029 ORTHO05D002162 1.8e-09 65.5 52 65.4
ClCG05G003640 Citrullus lanatus HOM05D000029 ORTHO05D002162 2.4e-09 65.1 54 64.8
GSVIVG01029038001 Vitis vinifera HOM05D000029 ORTHO05D002162 2.4e-09 65.1 53 62.3
Lalb_Chr01g0011101 Lupinus albus HOM05D000029 ORTHO05D002162 3.1e-09 64.7 52 61.5
Prupe.1G057600 Prunus persica HOM05D000029 ORTHO05D002162 4.1e-09 64.3 50 72.0
Ciclev10004196m.g Citrus clementina HOM05D000029 ORTHO05D002162 5.4e-09 63.9 48 62.5
Peaxi162Scf00047g01530 Petunia axillaris HOM05D000029 ORTHO05D002162 5.4e-09 63.9 52 63.5
Actinidia35942 Actinidia chinensis HOM05D000029 ORTHO05D002162 7.0e-09 63.5 53 58.5
Ca_27159_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002162 7.0e-09 63.5 54 61.1
Sed0017457 Sechium edule HOM05D000029 ORTHO05D002162 7.0e-09 63.5 54 64.8
CSS0001808 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002162 9.1e-09 63.2 52 63.5
Oeu025710.2 Olea europaea HOM05D000029 ORTHO05D002162 9.1e-09 63.2 54 55.6
arahy.Tifrunner.gnm1.ann1.E75PZG Arachis hypogaea HOM05D000029 ORTHO05D002162 1.2e-08 62.8 52 63.5
arahy.Tifrunner.gnm1.ann1.N1Y57V Arachis hypogaea HOM05D000029 ORTHO05D002162 1.2e-08 62.8 52 63.5
TWI53G0912 Tripterygium wilfordii HOM05D000029 ORTHO05D002162 1.2e-08 62.8 55 63.6
CANSAT78G0374 Cannabis sativa HOM05D000029 ORTHO05D002162 2.0e-08 62.0 54 63.0
Glyma.20G078100 Glycine max HOM05D000029 ORTHO05D002162 2.0e-08 62.0 52 59.6
Sabra01G0037600 Salix brachista HOM05D000029 ORTHO05D002162 2.0e-08 62.0 49 61.2
DCAR_024310 Daucus carota HOM05D000029 ORTHO05D002162 2.7e-08 61.6 52 57.7
Manes.08G142700 Manihot esculenta HOM05D000029 ORTHO05D002162 3.5e-08 61.2 46 69.6
MBI10_g16821_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D002162 5.9e-08 60.5 52 57.7
DCAR_027368 Daucus carota HOM05D000029 ORTHO05D002162 7.7e-08 60.1 53 58.5
Lju414A4T44 Lonicera japonica HOM05D000029 ORTHO05D002162 7.7e-08 60.1 53 62.3
CSS0020813 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002162 1.0e-07 59.7 47 63.8
Thecc.05G264700 Theobroma cacao HOM05D000029 ORTHO05D002162 1.0e-07 59.7 46 63.0
Glyma.10G126700 Glycine max HOM05D000029 ORTHO05D002162 1.3e-07 59.3 52 57.7
PSO063G2388 Papaver somniferum HOM05D000029 ORTHO05D002162 1.3e-07 59.3 56 58.9
Peaxi162Scf01426g00013 Petunia axillaris HOM05D000029 ORTHO05D002162 1.3e-07 59.3 37 81.1
ATR0787G142 Amborella trichopoda HOM05D000029 ORTHO05D002162 1.7e-07 58.9 52 55.8
Lalb_Chr03g0036741 Lupinus albus HOM05D000029 ORTHO05D002162 1.7e-07 58.9 51 56.9
Phvul.007G221800 Phaseolus vulgaris HOM05D000029 ORTHO05D002162 1.7e-07 58.9 52 55.8
vmacro15501 Vaccinium macrocarpon HOM05D000029 ORTHO05D002162 1.7e-07 58.9 53 56.6
Cpa.g.sc59.80 Carica papaya HOM05D000029 ORTHO05D002162 2.3e-07 58.5 55 60.0
Lsat_1_v5_gn_6_63460 Lactuca sativa HOM05D000029 ORTHO05D002162 2.3e-07 58.5 52 53.8
Nitab4.5_0008614g0020 Nicotiana tabacum HOM05D000029 ORTHO05D002162 2.3e-07 58.5 37 78.4
TAR362G1276 Trochodendron aralioides HOM05D000029 ORTHO05D002162 2.3e-07 58.5 50 62.0
MSTRG.24639 Avicennia marina HOM05D000029 ORTHO05D002162 2.9e-07 58.2 54 57.4
COL.COLO4_38178 Corchorus olitorius HOM05D000029 ORTHO05D002162 2.9e-07 58.2 46 60.9
Oeu033090.4 Olea europaea HOM05D000029 ORTHO05D002162 2.9e-07 58.2 54 55.6
Migut.N00330 Erythranthe guttata HOM05D000029 ORTHO05D002162 3.8e-07 57.8 56 53.6
Gohir.A08G218100 Gossypium hirsutum HOM05D000029 ORTHO05D002162 3.8e-07 57.8 46 63.0
Gohir.D08G235300 Gossypium hirsutum HOM05D000029 ORTHO05D002162 3.8e-07 57.8 46 63.0
Gorai.004G249900 Gossypium raimondii HOM05D000029 ORTHO05D002162 3.8e-07 57.8 46 63.0
MBI07_g08927_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D002162 3.8e-07 57.8 52 57.7
PSO017G7362 Papaver somniferum HOM05D000029 ORTHO05D002162 3.8e-07 57.8 56 57.1
TPR.G31255 Trifolium pratense HOM05D000029 ORTHO05D002162 3.8e-07 57.8 53 58.5
Aqoxy2G03833 Aquilegia oxysepala HOM05D000029 ORTHO05D002162 5.0e-07 57.4 52 55.8
Cc03_g07160 Coffea canephora HOM05D000029 ORTHO05D002162 6.6e-07 57.0 52 59.6
VMungo0720G0019 Vigna mungo HOM05D000029 ORTHO05D002162 8.6e-07 56.6 52 57.7
Potri.013G051300 Populus trichocarpa HOM05D000029 ORTHO05D002162 1.1e-06 56.2 41 68.3
Sabra19G0034900 Salix brachista HOM05D000029 ORTHO05D002162 1.1e-06 56.2 44 63.6
Duzib177G1187 Durio zibethinus HOM05D000029 ORTHO05D002162 1.5e-06 55.8 47 57.4
HanXRQChr02g0059501 Helianthus annuus HOM05D000029 ORTHO05D002162 1.5e-06 55.8 46 56.5
ECA233G1077 Erigeron canadensis HOM05D000029 ORTHO05D002162 1.9e-06 55.5 43 60.5
MD04G1235000 Malus domestica HOM05D000029 ORTHO05D002162 2.5e-06 55.1 53 60.4
Psat6g048240 Pisum sativum HOM05D000029 ORTHO05D002162 2.5e-06 55.1 54 59.3
QL03p033358 Quercus lobata HOM05D000029 ORTHO05D002162 3.3e-06 54.7 37 70.3
QL03p033384 Quercus lobata HOM05D000029 ORTHO05D002162 3.3e-06 54.7 37 70.3
Ciclev10018603m.g Citrus clementina HOM05D000029 ORTHO05D002162 4.2e-06 54.3 47 57.4
Nitab4.5_0003185g0080 Nicotiana tabacum HOM05D000029 ORTHO05D002162 4.2e-06 54.3 36 75.0
Duzib106G1346 Durio zibethinus HOM05D000029 ORTHO05D002162 5.5e-06 53.9 46 58.7
Potri.019G025500 Populus trichocarpa HOM05D000029 ORTHO05D002162 5.5e-06 53.9 43 62.8
EL10Ac4g09789 Beta vulgaris HOM05D000029 ORTHO05D002162 9.5e-06 53.1 55 50.9
CAN.G706.31 Capsicum annuum HOM05D000029 ORTHO05D002162 9.5e-06 53.1 37 73.0
AUR62000643 Chenopodium quinoa HOM05D000029 ORTHO05D002162 9.5e-06 53.1 55 50.9
FAN02G0120 Fragaria x ananassa HOM05D000029 ORTHO05D002162 9.5e-06 53.1 36 69.4
Lj6g0014711 Lotus japonicus HOM05D000029 ORTHO05D002162 9.5e-06 53.1 52 55.8
Nn1g03095 Nelumbo nucifera HOM05D000029 ORTHO05D002162 9.5e-06 53.1 52 53.8
Hund21753 Selenicereus undatus HOM05D000029 ORTHO05D002162 9.5e-06 53.1 52 53.8
SEGI_02526 Sequoiadendron giganteum HOM05D000029 ORTHO05D002162 9.5e-06 53.1 53 50.9


User provided reference genes

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