Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 6.9e-116 420.6 209 100.0
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.0e-83 312.8 209 73.2
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.7e-82 309.7 209 74.2
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.6e-80 303.1 206 72.3
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 4.7e-80 301.6 209 70.8
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 6.1e-80 301.2 209 72.2
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.0e-80 300.8 209 70.3
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.0e-79 300.4 208 70.2
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 1.0e-79 300.4 206 71.8
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.4e-79 300.1 209 71.8
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.0e-79 298.5 207 73.4
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 4.0e-79 298.5 206 71.8
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 4.0e-79 298.5 209 71.3
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 6.8e-79 297.7 209 69.4
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 8.9e-79 297.4 209 72.2
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.2e-78 297.0 209 71.3
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.0e-78 296.2 209 70.3
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 2.0e-78 296.2 206 71.8
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 2.6e-78 295.8 209 70.3
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 3.4e-78 295.4 206 71.8
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 4.4e-78 295.0 208 71.6
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 4.4e-78 295.0 209 71.8
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 7.5e-78 294.3 208 69.7
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 9.8e-78 293.9 209 70.8
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 9.8e-78 293.9 209 69.4
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 9.8e-78 293.9 209 71.3
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 1.3e-77 293.5 209 69.4
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.7e-77 293.1 206 71.4
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 2.2e-77 292.7 208 70.2
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.8e-77 292.4 209 69.9
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 6.3e-77 291.2 209 70.3
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 8.3e-77 290.8 209 69.4
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 8.3e-77 290.8 209 71.3
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.1e-76 290.4 209 67.5
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.4e-76 290.0 209 69.4
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 1.4e-76 290.0 209 68.9
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 1.4e-76 290.0 209 68.4
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.8e-76 289.7 206 68.9
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.8e-76 289.7 206 71.8
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.4e-76 289.3 208 69.7
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.4e-76 289.3 208 69.7
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.4e-76 289.3 209 68.4
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 2.4e-76 289.3 209 68.4
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 3.1e-76 288.9 209 71.3
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 3.1e-76 288.9 209 67.0
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 3.1e-76 288.9 206 71.8
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 4.1e-76 288.5 209 68.9
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 4.1e-76 288.5 208 69.7
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 5.4e-76 288.1 206 69.9
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 9.2e-76 287.3 209 68.4
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.2e-75 287.0 209 68.4
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 2.0e-75 286.2 231 64.5
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 2.7e-75 285.8 205 69.3
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.5e-75 285.4 207 69.6
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 4.5e-75 285.0 208 68.3
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 5.9e-75 284.6 207 70.5
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 5.9e-75 284.6 205 67.8
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 7.8e-75 284.3 207 68.6
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 7.8e-75 284.3 210 68.6
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.3e-74 283.5 209 69.4
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.3e-74 283.5 210 68.1
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.3e-74 283.5 203 70.4
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 2.3e-74 282.7 206 69.9
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 2.9e-74 282.3 209 66.5
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.9e-74 282.3 209 66.5
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 2.9e-74 282.3 209 66.5
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 5.0e-74 281.6 207 71.0
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 5.0e-74 281.6 206 68.4
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 6.6e-74 281.2 209 66.5
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 8.6e-74 280.8 210 67.6
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.1e-73 280.4 206 68.4
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.1e-73 280.4 206 68.4
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 1.1e-73 280.4 208 67.3
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 1.9e-73 279.6 206 68.0
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 2.5e-73 279.3 196 69.4
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 5.6e-73 278.1 206 68.0
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 5.6e-73 278.1 209 65.6
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 7.3e-73 277.7 206 68.0
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 7.3e-73 277.7 206 68.4
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.6e-72 276.6 206 68.4
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.6e-72 276.6 206 67.5
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 2.1e-72 276.2 206 67.0
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 2.1e-72 276.2 206 67.0
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.1e-72 276.2 211 67.3
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 2.1e-72 276.2 206 68.4
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.7e-72 275.0 210 67.6
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.0e-71 273.9 206 67.0
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.0e-71 273.9 210 67.6
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 1.4e-71 273.5 210 67.6
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.8e-71 273.1 206 67.5
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 1.8e-71 273.1 209 67.5
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 2.3e-71 272.7 206 67.0
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 2.3e-71 272.7 206 67.0
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 2.3e-71 272.7 206 67.0
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 3.1e-71 272.3 206 67.0
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.1e-71 272.3 206 67.0
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 3.1e-71 272.3 209 67.5
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 4.0e-71 271.9 207 67.6
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 4.0e-71 271.9 206 66.5
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 8.9e-71 270.8 206 66.5
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 8.9e-71 270.8 210 63.8
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.2e-70 270.4 207 68.6
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 5.8e-70 268.1 206 66.0
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 5.8e-70 268.1 207 67.6
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 2.9e-69 265.8 210 63.3
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 8.3e-69 264.2 207 61.8
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 1.4e-68 263.5 199 66.3
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.4e-68 262.7 216 63.0
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.6e-67 260.0 204 63.7
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.5e-67 258.8 209 61.7
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.3e-66 256.1 207 65.2
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.3e-66 256.1 209 61.7
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.9e-65 253.1 209 62.7
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 9.5e-65 250.8 207 58.9
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.1e-64 249.6 197 67.0
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 1.2e-62 243.8 210 61.9
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.3e-61 240.4 207 55.6
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 3.3e-57 225.7 209 54.1
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 9.2e-52 207.6 215 50.2
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.9e-50 202.2 206 52.9
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 5.1e-50 201.8 211 50.7
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.3e-49 198.7 147 68.7
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 6.2e-48 194.9 151 65.6
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 4.4e-46 188.7 209 53.6
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 7.6e-46 188.0 144 67.4
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.2e-45 186.4 144 63.9
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 4.9e-45 185.3 138 70.3
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 3.2e-44 182.6 140 67.1
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 4.6e-43 178.7 200 48.5
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 7.8e-43 177.9 133 69.2
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.8e-40 168.7 159 56.0
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.4e-39 167.2 153 58.2
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.5e-30 135.6 179 46.9
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.3e-25 119.0 73 74.0
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 4.3e-25 119.0 197 38.1
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.3e-24 117.5 198 35.9
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 1.6e-24 117.1 127 48.8
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 4.8e-24 115.5 100 56.0
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.5e-22 110.5 207 37.2
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.0e-21 107.8 136 47.1
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.9e-20 103.6 66 74.2
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 4.6e-19 99.0 71 66.2
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 4.5e-14 82.4 60 66.7
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.8e-13 79.3 74 58.1
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 3.2e-12 76.3 66 59.1
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 7.9e-11 71.6 120 40.0
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.3e-10 70.9 77 55.8
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.1e-07 59.3 71 43.7
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.0e-06 57.0 49 53.1
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 1.0e-05 54.7 81 38.3
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.0e-05 54.7 43 55.8


User provided reference genes

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