Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 9.4e-234 813.1 409 100.0
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 1.0e-179 633.6 406 76.4
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 3.0e-179 632.1 406 76.1
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 2.1e-177 625.9 408 74.3
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 2.8e-177 625.5 408 73.8
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 8.9e-176 620.5 408 73.8
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 5.8e-175 617.8 399 73.7
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 7.6e-175 617.5 408 72.8
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.3e-174 616.7 408 72.5
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 4.9e-174 614.8 408 72.5
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 1.1e-173 613.6 408 74.3
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.2e-172 610.1 406 73.4
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 1.6e-172 609.8 408 72.1
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 2.1e-172 609.4 403 73.2
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 3.5e-172 608.6 408 73.8
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 4.6e-172 608.2 406 73.6
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.0e-171 607.1 408 71.1
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.0e-171 607.1 408 71.1
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.7e-171 606.3 408 72.8
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.7e-171 606.3 408 71.6
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 2.3e-171 605.9 408 72.8
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 3.0e-171 605.5 411 70.6
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 3.0e-171 605.5 408 72.8
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 3.0e-171 605.5 408 71.3
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 8.7e-171 604.0 408 72.1
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 2.5e-170 602.4 408 72.1
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 3.3e-170 602.1 408 71.1
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 4.3e-170 601.7 409 72.6
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.3e-170 601.7 408 71.8
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 7.3e-170 600.9 408 71.8
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 8.1e-169 597.4 408 70.6
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 1.1e-168 597.0 406 72.9
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 1.1e-168 597.0 406 72.9
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 1.1e-168 597.0 406 72.9
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.4e-168 596.7 408 72.3
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 3.1e-168 595.5 408 71.3
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 5.3e-168 594.7 408 69.6
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 9.0e-168 594.0 408 69.9
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.2e-167 593.6 408 70.8
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 3.4e-167 592.0 407 71.7
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.3e-166 590.1 399 70.7
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.9e-166 589.0 399 70.7
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.9e-166 589.0 401 70.3
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 4.9e-166 588.2 408 70.6
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.1e-165 587.0 407 70.3
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.4e-165 585.9 408 69.4
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 4.2e-165 585.1 407 71.5
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 7.1e-165 584.3 406 69.7
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 7.1e-165 584.3 408 69.4
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 2.7e-164 582.4 406 70.2
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 6.0e-164 581.3 408 70.3
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 6.0e-164 581.3 400 72.0
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.7e-163 579.7 407 71.3
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 3.0e-163 578.9 406 69.0
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 3.9e-163 578.6 407 70.8
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 1.1e-162 577.0 405 70.4
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.1e-162 577.0 407 69.3
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.5e-162 576.6 409 68.7
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.5e-162 576.6 408 69.9
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.5e-162 576.6 409 68.2
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 5.6e-162 574.7 408 69.9
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 7.3e-162 574.3 407 69.0
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 7.3e-162 574.3 407 69.0
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 2.1e-161 572.8 407 68.3
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 2.8e-161 572.4 407 69.0
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 6.2e-161 571.2 405 68.6
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 6.2e-161 571.2 407 69.0
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 2.4e-160 569.3 405 67.7
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 2.4e-160 569.3 407 67.8
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 4.0e-160 568.5 408 68.4
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 1.5e-159 566.6 407 68.1
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 7.6e-159 564.3 408 68.1
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.7e-158 563.1 405 67.9
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 1.7e-158 563.1 405 68.6
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 2.9e-158 562.4 400 69.0
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.8e-158 562.0 406 66.3
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 8.4e-158 560.8 411 65.7
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 8.4e-158 560.8 405 68.4
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 8.4e-158 560.8 436 66.3
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 4.2e-157 558.5 401 68.6
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 5.4e-157 558.1 401 68.6
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.6e-156 556.6 411 65.0
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 4.6e-156 555.1 411 65.2
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 7.9e-156 554.3 405 68.9
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.0e-155 553.9 411 65.0
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.8e-155 553.1 405 67.9
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 2.3e-155 552.7 411 64.5
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 2.3e-155 552.7 411 64.5
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 2.3e-155 552.7 411 64.5
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 3.0e-155 552.4 423 65.7
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 3.9e-155 552.0 400 68.5
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 6.7e-155 551.2 400 68.8
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 6.7e-155 551.2 409 64.8
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.1e-154 550.4 397 69.8
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.3e-153 547.0 405 66.9
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.6e-153 546.6 408 64.0
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 1.6e-153 546.6 409 65.5
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 6.2e-153 544.7 398 67.1
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 1.4e-152 543.5 408 66.4
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 4.0e-152 542.0 408 65.9
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 9.0e-152 540.8 491 58.5
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.5e-151 540.0 411 64.0
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 2.0e-151 539.7 409 62.6
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 3.4e-151 538.9 405 65.9
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 9.9e-151 537.3 405 65.7
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 1.7e-150 536.6 405 65.7
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 2.2e-150 536.2 405 65.4
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 4.9e-150 535.0 360 73.6
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 3.5e-148 528.9 353 72.0
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 7.9e-148 527.7 405 66.2
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 3.0e-147 525.8 408 65.7
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.9e-147 525.4 410 63.2
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 4.3e-146 521.9 409 64.1
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 2.7e-140 502.7 406 62.8
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 8.7e-139 497.7 353 68.3
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 4.3e-138 495.4 405 60.5
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 2.8e-137 492.7 311 78.1
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 2.8e-137 492.7 405 59.5
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 7.2e-133 478.0 314 74.5
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.1e-128 464.2 403 57.8
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 5.9e-127 458.4 415 56.1
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 8.5e-126 454.5 404 57.7
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.7e-124 448.7 411 56.9
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.8e-115 420.2 273 73.3
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 2.1e-108 396.7 273 71.4
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 6.8e-107 391.7 362 56.6
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 4.5e-103 379.0 311 61.1
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 1.5e-101 374.0 267 71.2
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.4e-99 367.5 420 46.2
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 9.8e-98 361.3 410 48.5
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 4.0e-91 339.3 416 45.4
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.5e-90 337.4 415 49.6
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 2.6e-90 336.7 406 46.6
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 5.4e-80 302.4 442 41.0
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 3.6e-76 289.7 249 61.8
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 4.4e-66 256.1 161 78.9
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 3.9e-62 243.0 173 71.1
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 3.3e-61 240.0 175 68.6
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 3.3e-61 240.0 176 65.3
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 8.9e-59 231.9 177 63.8
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.4e-56 223.8 212 56.1
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 8.1e-52 208.8 135 72.6
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 1.1e-51 208.4 348 37.1
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 3.1e-51 206.8 148 67.6
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 2.1e-47 194.1 107 85.0
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.1e-47 194.1 192 54.2
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 1.5e-37 161.4 93 83.9
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 3.7e-28 130.2 101 60.4
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 4.3e-21 106.7 98 58.2
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 1.7e-17 94.7 70 64.3
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 1.1e-16 92.0 334 27.5
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 9.4e-16 89.0 81 56.8
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.0e-14 85.5 56 69.6


User provided reference genes

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