Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 4.4e-141 505.0 328 100.0
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 2.1e-95 353.2 332 56.0
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 5.3e-94 348.6 344 63.7
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 9.0e-94 347.8 346 66.2
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 2.6e-93 346.3 346 66.5
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 6.4e-92 341.7 344 65.7
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 1.1e-91 340.9 341 67.2
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 1.4e-91 340.5 348 66.1
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 1.4e-91 340.5 357 60.5
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 1.9e-91 340.1 344 65.4
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 7.1e-91 338.2 357 63.0
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 9.3e-91 337.8 344 65.1
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.1e-90 336.7 344 64.8
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 1.3e-89 334.0 352 64.5
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.3e-89 333.2 346 63.6
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 3.0e-89 332.8 357 64.4
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 5.1e-89 332.0 341 61.6
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 1.5e-88 330.5 353 63.5
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 2.5e-88 329.7 346 63.0
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 4.3e-88 328.9 344 63.4
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 9.6e-88 327.8 353 66.0
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 1.3e-87 327.4 341 62.5
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 4.8e-87 325.5 353 67.7
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.1e-86 324.3 350 62.9
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 1.8e-86 323.6 331 66.8
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 6.9e-86 321.6 353 67.4
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 1.2e-85 320.9 353 62.6
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 2.6e-85 319.7 377 59.4
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 5.8e-85 318.5 347 62.5
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 1.7e-84 317.0 359 63.0
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 2.9e-84 316.2 347 62.5
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 4.9e-84 315.5 353 65.7
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 3.2e-83 312.8 353 65.2
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 4.2e-83 312.4 322 71.1
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 5.5e-83 312.0 353 61.5
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 1.2e-82 310.8 353 66.6
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 6.0e-82 308.5 355 65.4
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 1.3e-81 307.4 342 62.0
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 3.9e-81 305.8 353 65.7
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 3.3e-80 302.8 348 60.3
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 1.6e-79 300.4 335 63.9
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 1.1e-78 297.7 347 59.7
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 1.4e-78 297.4 347 59.1
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 2.0e-77 293.5 378 56.6
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 2.6e-77 293.1 348 60.6
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 4.5e-77 292.4 357 58.5
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 1.7e-76 290.4 343 67.1
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 1.7e-76 290.4 357 59.7
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 3.8e-76 289.3 346 59.8
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 2.1e-74 283.5 357 57.7
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 7.9e-74 281.6 302 51.0
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 7.9e-74 281.6 357 56.6
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 1.3e-73 280.8 339 47.8
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 6.7e-73 278.5 356 56.7
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 8.7e-73 278.1 390 55.6
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 1.1e-72 277.7 286 66.4
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 1.9e-72 276.9 363 62.8
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 2.5e-72 276.6 350 46.9
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 2.5e-72 276.6 350 46.9
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 3.3e-72 276.2 348 64.4
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 2.8e-71 273.1 346 59.0
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 3.7e-71 272.7 346 56.6
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 1.4e-70 270.8 288 66.7
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 1.0e-68 264.6 347 57.3
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 1.0e-68 264.6 348 54.6
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 3.8e-68 262.7 345 57.1
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 5.0e-68 262.3 341 56.3
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 6.5e-68 261.9 348 63.5
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 6.5e-68 261.9 348 63.5
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 2.5e-67 260.0 345 57.1
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 1.0e-65 254.6 356 51.1
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 2.3e-65 253.4 345 56.2
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 3.0e-65 253.1 290 63.1
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 8.2e-63 245.0 314 44.6
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 2.4e-62 243.4 364 54.7
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 6.9e-62 241.9 297 66.3
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 6.9e-62 241.9 346 54.9
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 1.7e-60 237.3 358 53.4
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 1.1e-59 234.6 312 42.6
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 2.5e-59 233.4 277 63.9
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 9.4e-59 231.5 326 54.9
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 1.2e-58 231.1 281 62.3
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 3.6e-58 229.6 346 53.2
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 3.6e-58 229.6 290 60.3
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 3.3e-56 223.0 403 45.7
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 1.3e-55 221.1 277 67.5
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 3.7e-55 219.5 332 54.2
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 6.3e-55 218.8 359 47.4
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 1.8e-54 217.2 342 53.5
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 9.1e-54 214.9 277 67.1
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 7.2e-51 205.3 352 44.6
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 3.6e-50 203.0 348 48.6
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 7.9e-50 201.8 153 66.0
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 3.0e-49 199.9 339 47.5
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 6.7e-49 198.7 137 67.9
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 1.3e-44 184.5 341 51.3
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 6.5e-44 182.2 357 52.9
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 5.5e-43 179.1 290 55.5
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 4.7e-42 176.0 155 60.0
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 2.2e-39 167.2 253 58.5
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 4.1e-38 162.9 411 30.2
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 5.3e-38 162.5 345 43.2
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 1.6e-34 151.0 402 41.3
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 4.0e-33 146.4 219 37.9
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 3.4e-32 143.3 346 40.8
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.7e-31 141.0 193 52.8
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 6.8e-25 119.0 87 64.4
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 2.6e-24 117.1 130 63.1
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 3.4e-24 116.7 245 40.8
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 2.0e-21 107.5 211 33.2
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 8.0e-18 95.5 107 49.5
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 8.0e-18 95.5 107 49.5
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 1.8e-14 84.3 271 24.4


User provided reference genes

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