Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 1.6e-98 362.8 191 100.0
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.3e-81 306.6 191 82.7
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 3.3e-80 302.0 191 80.6
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 3.6e-79 298.5 197 77.7
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 3.1e-78 295.4 191 79.1
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 1.2e-77 293.5 194 78.4
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 1.5e-77 293.1 194 80.9
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 7.6e-77 290.8 193 79.3
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 9.9e-77 290.4 197 75.6
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 9.9e-77 290.4 191 78.5
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 1.3e-76 290.0 193 78.8
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.2e-76 289.3 190 76.8
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 2.2e-76 289.3 197 76.1
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.9e-76 288.9 191 78.0
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 2.9e-76 288.9 194 77.3
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 4.9e-76 288.1 195 79.5
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 8.4e-76 287.3 193 79.3
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 1.4e-75 286.6 193 79.3
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 1.4e-75 286.6 194 75.8
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.4e-75 285.8 194 76.8
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 2.4e-75 285.8 198 74.2
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 3.2e-75 285.4 192 78.1
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 3.2e-75 285.4 192 78.1
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 3.2e-75 285.4 192 78.1
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 5.4e-75 284.6 193 78.8
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 7.1e-75 284.3 194 78.9
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 7.1e-75 284.3 195 76.9
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 7.1e-75 284.3 197 75.6
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 9.3e-75 283.9 198 77.3
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 1.2e-74 283.5 198 76.8
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 1.2e-74 283.5 198 77.3
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.2e-74 283.5 191 75.4
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 1.2e-74 283.5 197 75.6
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 2.1e-74 282.7 194 77.8
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 2.1e-74 282.7 191 75.9
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 3.5e-74 282.0 194 78.4
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 3.5e-74 282.0 188 77.7
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 4.6e-74 281.6 191 74.9
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 4.6e-74 281.6 194 76.8
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 6.0e-74 281.2 194 76.8
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.0e-73 280.4 194 76.8
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 1.0e-73 280.4 194 76.3
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.0e-73 280.4 194 76.8
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.0e-73 280.4 194 76.8
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.0e-73 280.4 195 75.9
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 1.0e-73 280.4 195 75.9
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 1.0e-73 280.4 198 76.3
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 1.3e-73 280.0 187 75.9
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.3e-73 280.0 197 77.2
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 1.3e-73 280.0 195 75.4
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 1.3e-73 280.0 186 78.0
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 1.7e-73 279.6 195 75.4
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.7e-73 279.6 195 75.9
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 1.7e-73 279.6 193 77.2
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 2.3e-73 279.3 194 76.3
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 3.0e-73 278.9 194 76.3
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 3.0e-73 278.9 195 75.4
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 3.9e-73 278.5 199 76.9
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 3.9e-73 278.5 197 76.6
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 3.9e-73 278.5 199 75.9
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 5.1e-73 278.1 195 75.4
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 6.6e-73 277.7 197 76.6
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 6.6e-73 277.7 194 77.3
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 6.6e-73 277.7 186 76.9
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 1.1e-72 276.9 200 75.5
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 1.1e-72 276.9 197 76.1
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 2.5e-72 275.8 195 76.4
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 3.3e-72 275.4 189 76.2
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 4.3e-72 275.0 180 78.3
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 4.3e-72 275.0 195 76.4
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 7.3e-72 274.2 193 76.2
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 9.6e-72 273.9 189 75.7
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 9.6e-72 273.9 194 75.8
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 8.1e-71 270.8 198 73.7
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 1.4e-70 270.0 194 73.7
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 2.4e-70 269.2 193 74.6
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 3.1e-70 268.9 193 76.2
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 4.0e-70 268.5 192 75.0
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 4.0e-70 268.5 192 74.5
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 5.3e-70 268.1 192 75.0
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 5.3e-70 268.1 192 75.0
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 5.3e-70 268.1 192 74.5
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 9.0e-70 267.3 192 75.0
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 1.5e-69 266.5 192 74.0
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 1.5e-69 266.5 192 74.0
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 7.6e-69 264.2 192 73.4
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 4.2e-67 258.5 194 72.7
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 4.2e-67 258.5 194 72.7
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 7.1e-67 257.7 195 71.3
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 7.1e-67 257.7 199 66.8
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 9.3e-67 257.3 191 74.3
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 4.6e-66 255.0 188 71.3
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 7.9e-66 254.2 179 74.9
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 1.3e-65 253.4 187 68.4
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 2.3e-65 252.7 178 74.2
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 3.0e-65 252.3 186 70.4
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 1.1e-64 250.4 189 72.5
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 5.6e-64 248.1 194 70.1
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 5.6e-64 248.1 191 70.2
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 2.1e-63 246.1 185 70.3
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 1.8e-62 243.0 174 73.6
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 3.1e-62 242.3 199 63.3
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 4.0e-62 241.9 182 70.9
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 3.4e-61 238.8 192 65.6
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 4.5e-61 238.4 197 63.5
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 5.8e-61 238.0 207 60.9
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 1.2e-58 230.3 180 66.1
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 6.2e-55 218.0 183 58.5
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 4.5e-53 211.8 136 80.1
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 2.7e-50 202.6 138 78.3
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 5.1e-49 198.4 195 62.1
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 7.4e-48 194.5 201 57.2
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 2.1e-47 193.0 136 75.7
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 2.1e-47 193.0 167 64.1
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 5.9e-45 184.9 191 57.6
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 3.3e-40 169.1 194 52.1
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 6.3e-39 164.9 101 77.2
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.2e-37 160.6 123 69.1
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 1.4e-35 153.7 115 73.0
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 2.1e-34 149.8 114 69.3
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 6.7e-33 144.8 165 46.7
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 2.5e-27 126.3 88 70.5
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 1.0e-25 120.9 98 66.3
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 4.4e-24 115.5 135 52.6
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 4.4e-24 115.5 98 63.3
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 5.9e-21 105.1 79 67.1
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 5.5e-19 98.6 76 72.4
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 5.7e-16 88.6 169 32.0
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 2.2e-15 86.7 88 56.8
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 3.7e-15 85.9 45 86.7
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 9.1e-14 81.3 159 32.1
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 4.7e-10 68.9 43 72.1


User provided reference genes

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