Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0002300 Simmondsia chinensis HOM05D005723 ORTHO05D005968 2.1e-163 578.9 286 100.0
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 4.6e-110 401.7 294 71.8
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 5.6e-108 394.8 292 70.9
EL10Ac3g06909 Beta vulgaris HOM05D005723 ORTHO05D005968 1.2e-107 393.7 291 72.5
Manes.08G043200 Manihot esculenta HOM05D005723 ORTHO05D005968 1.2e-107 393.7 294 69.0
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 2.1e-107 392.9 298 69.5
Cfa020161 Carpinus fangiana HOM05D005723 ORTHO05D005968 1.4e-106 390.2 298 69.1
TWI53G1132 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 8.9e-106 387.5 299 67.9
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 3.4e-105 385.6 298 68.1
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 7.5e-105 384.4 303 66.3
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 1.3e-104 383.6 294 68.4
Prupe.7G077500 Prunus persica HOM05D005723 ORTHO05D005968 2.2e-104 382.9 233 80.3
Gohir.A09G128200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 6.4e-104 381.3 289 67.8
Gohir.D09G124200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 7.1e-103 377.9 289 67.5
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 9.2e-103 377.5 289 67.8
Potri.006G192800 Populus trichocarpa HOM05D005723 ORTHO05D005968 2.7e-102 375.9 224 80.4
Gorai.006G143000 Gossypium raimondii HOM05D005723 ORTHO05D005968 3.5e-102 375.6 290 67.6
Sabra06G0148000 Salix brachista HOM05D005723 ORTHO05D005968 4.6e-102 375.2 225 80.0
FAN02G2166 Fragaria x ananassa HOM05D005723 ORTHO05D005968 1.0e-101 374.0 308 64.9
FAN14G2504 Fragaria x ananassa HOM05D005723 ORTHO05D005968 1.0e-101 374.0 307 63.8
MD12G1056700 Malus domestica HOM05D005723 ORTHO05D005968 1.7e-101 373.2 236 77.5
Nn2g15696 Nelumbo nucifera HOM05D005723 ORTHO05D005968 2.3e-101 372.9 294 64.3
RcHm_v2.0_Chr3g0479531 Rosa chinensis HOM05D005723 ORTHO05D005968 6.6e-101 371.3 299 67.2
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 1.1e-100 370.5 296 66.6
QL07p023897 Quercus lobata HOM05D005723 ORTHO05D005968 5.6e-100 368.2 301 65.8
Potri.016G045300 Populus trichocarpa HOM05D005723 ORTHO05D005968 7.3e-100 367.9 294 66.0
Aa31LG1G24130 Aethionema arabicum HOM05D005723 ORTHO05D005968 1.6e-99 366.7 294 65.3
Sopen03g015150 Solanum pennellii HOM05D005723 ORTHO05D005968 1.6e-99 366.7 289 66.4
Atru.chr8.1119 Acer truncatum HOM05D005723 ORTHO05D005968 6.2e-99 364.8 299 62.9
SGA_v2.0_scaffold274G46488 Striga asiatica HOM05D005723 ORTHO05D005968 6.2e-99 364.8 296 66.6
Solyc03g062830.3 Solanum lycopersicum HOM05D005723 ORTHO05D005968 1.8e-98 363.2 289 66.1
GSVIVG01033492001 Vitis vinifera HOM05D005723 ORTHO05D005968 4.0e-98 362.1 235 74.9
Thecc.05G171800 Theobroma cacao HOM05D005723 ORTHO05D005968 6.8e-98 361.3 298 63.4
Sed0013306 Sechium edule HOM05D005723 ORTHO05D005968 8.9e-98 360.9 304 63.2
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 1.2e-97 360.5 280 67.9
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 1.2e-97 360.5 300 64.7
AT2G42070 Arabidopsis thaliana HOM05D005723 ORTHO05D005968 1.5e-97 360.1 288 64.6
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 2.0e-97 359.8 290 65.9
Thhalv10017043m.g Eutrema salsugineum HOM05D005723 ORTHO05D005968 2.6e-97 359.4 297 62.3
THA.LOC104824477 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 3.4e-97 359.0 297 63.6
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 4.4e-97 358.6 286 65.0
Nitab4.5_0000324g0030 Nicotiana tabacum HOM05D005723 ORTHO05D005968 4.4e-97 358.6 202 82.7
MELO3C009621.2 Cucumis melo HOM05D005723 ORTHO05D005968 5.8e-97 358.2 307 62.9
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 5.8e-97 358.2 207 81.6
Phvul.001G142700 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 2.2e-96 356.3 289 63.0
AL4G40430 Arabidopsis lyrata HOM05D005723 ORTHO05D005968 2.9e-96 355.9 288 64.2
Migut.K00036 Erythranthe guttata HOM05D005723 ORTHO05D005968 2.9e-96 355.9 302 62.6
Lalb_Chr18g0047891 Lupinus albus HOM05D005723 ORTHO05D005968 3.7e-96 355.5 284 62.0
VMungo1383G0807 Vigna mungo HOM05D005723 ORTHO05D005968 3.7e-96 355.5 289 63.3
A03p23560 Brassica napus HOM05D005723 ORTHO05D005968 6.4e-96 354.8 293 63.8
BraA03t11573Z Brassica rapa HOM05D005723 ORTHO05D005968 6.4e-96 354.8 293 63.8
CANSAT64G2568 Cannabis sativa HOM05D005723 ORTHO05D005968 6.4e-96 354.8 298 62.4
Cc06_g15920 Coffea canephora HOM05D005723 ORTHO05D005968 8.4e-96 354.4 261 69.7
BcaB01g03439 Brassica carinata HOM05D005723 ORTHO05D005968 1.1e-95 354.0 293 63.8
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 1.1e-95 354.0 289 64.0
BraA05t19263Z Brassica rapa HOM05D005723 ORTHO05D005968 1.9e-95 353.2 284 62.7
Carub.0004s2440 Capsella rubella HOM05D005723 ORTHO05D005968 1.9e-95 353.2 288 64.6
Medtr7g093280 Medicago truncatula HOM05D005723 ORTHO05D005968 2.4e-95 352.8 214 75.2
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 3.2e-95 352.4 200 81.0
Lj1g0008741 Lotus japonicus HOM05D005723 ORTHO05D005968 3.2e-95 352.4 215 74.9
Psat3g068400 Pisum sativum HOM05D005723 ORTHO05D005968 4.1e-95 352.1 210 76.2
TPR.G18229 Trifolium pratense HOM05D005723 ORTHO05D005968 4.1e-95 352.1 286 60.5
Glyma.19G148100 Glycine max HOM05D005723 ORTHO05D005968 7.1e-95 351.3 256 67.2
Aqoxy1G00026 Aquilegia oxysepala HOM05D005723 ORTHO05D005968 1.2e-94 350.5 196 80.1
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 1.2e-94 350.5 290 64.1
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 2.1e-94 349.7 284 62.3
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 2.1e-94 349.7 284 62.3
Glyma.09G111000 Glycine max HOM05D005723 ORTHO05D005968 3.5e-94 349.0 217 74.7
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 6.0e-94 348.2 284 62.3
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 6.0e-94 348.2 288 63.5
Ca_08526_v3 Cicer arietinum L. HOM05D005723 ORTHO05D005968 7.8e-94 347.8 288 61.5
Phvul.007G260200 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 5.1e-93 345.1 217 74.7
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 8.6e-93 344.4 217 74.2
FvH4_6g22180 Fragaria vesca HOM05D005723 ORTHO05D005968 3.3e-92 342.4 277 66.8
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 1.6e-91 340.1 258 71.3
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 2.1e-91 339.7 272 65.4
FAN05G3703 Fragaria x ananassa HOM05D005723 ORTHO05D005968 8.1e-91 337.8 289 63.7
Ciclev10013558m.g Citrus clementina HOM05D005723 ORTHO05D005968 8.9e-90 334.3 242 70.7
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 2.6e-89 332.8 207 76.3
DCAR_019848 Daucus carota HOM05D005723 ORTHO05D005968 4.4e-89 332.0 299 61.5
MBI08_g23085_MAGBIO Magnolia biondii HOM05D005723 ORTHO05D005968 2.2e-88 329.7 263 63.5
MSTRG.6477 Avicennia marina HOM05D005723 ORTHO05D005968 1.4e-87 327.0 296 60.5
Lsat_1_v5_gn_5_163580 Lactuca sativa HOM05D005723 ORTHO05D005968 4.2e-87 325.5 291 61.2
ClCG10G017570 Citrullus lanatus HOM05D005723 ORTHO05D005968 5.4e-87 325.1 307 59.9
MD14G1055000 Malus domestica HOM05D005723 ORTHO05D005968 1.6e-86 323.6 211 75.4
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 2.7e-86 322.8 229 71.6
CDE05G2791 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 6.0e-86 321.6 287 58.5
Glyma.03G145000 Glycine max HOM05D005723 ORTHO05D005968 5.1e-85 318.5 191 76.4
Sp4g24280 Schrenkiella parvula HOM05D005723 ORTHO05D005968 1.9e-84 316.6 294 60.2
Nitab4.5_0002488g0020 Nicotiana tabacum HOM05D005723 ORTHO05D005968 4.3e-84 315.5 275 64.0
CDE05G1067 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 5.6e-84 315.1 225 65.8
arahy.Tifrunner.gnm1.ann1.USMU0G Arachis hypogaea HOM05D005723 ORTHO05D005968 1.3e-83 313.9 211 71.1
Zm00001eb320790 Zea mays HOM05D005723 ORTHO05D005968 1.4e-82 310.5 195 69.2
PSO339G0271 Papaver somniferum HOM05D005723 ORTHO05D005968 2.6e-81 306.2 301 55.5
PSO384G0309 Papaver somniferum HOM05D005723 ORTHO05D005968 2.6e-81 306.2 301 54.5
Cpa.g.sc85.50 Carica papaya HOM05D005723 ORTHO05D005968 4.4e-81 305.4 296 58.4
Zm00001eb104410 Zea mays HOM05D005723 ORTHO05D005968 1.3e-80 303.9 195 68.2
C03p28100 Brassica napus HOM05D005723 ORTHO05D005968 1.7e-80 303.5 273 60.4
SalBow1G1145 Salvia bowleyana HOM05D005723 ORTHO05D005968 2.9e-80 302.8 259 66.4
ATR0807G138 Amborella trichopoda HOM05D005723 ORTHO05D005968 3.2e-79 299.3 270 59.6
AUR62015361 Chenopodium quinoa HOM05D005723 ORTHO05D005968 1.2e-78 297.4 159 89.9
HPP92_009024 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.5e-76 290.4 209 65.1
CsaV3_3G038770 Cucumis sativus L. HOM05D005723 ORTHO05D005968 3.3e-76 289.3 271 60.5
Pp3c12_9930 Physcomitrium patens HOM05D005723 ORTHO05D005968 9.0e-74 281.2 220 59.1
HanXRQChr01g0009761 Helianthus annuus HOM05D005723 ORTHO05D005968 3.4e-73 279.3 159 81.8
Oeu034265.1 Olea europaea HOM05D005723 ORTHO05D005968 5.8e-73 278.5 156 85.9
AUR62012024 Chenopodium quinoa HOM05D005723 ORTHO05D005968 9.9e-73 277.7 151 88.1
arahy.Tifrunner.gnm1.ann1.4E6ATU Arachis hypogaea HOM05D005723 ORTHO05D005968 7.1e-71 271.6 264 56.8
ECA248G2266 Erigeron canadensis HOM05D005723 ORTHO05D005968 7.1e-71 271.6 159 81.1
SMO358G0738 Selaginella moellendorffii HOM05D005723 ORTHO05D005968 3.9e-69 265.8 199 61.8
unitig_748.g7589 Utricularia gibba HOM05D005723 ORTHO05D005968 1.9e-63 246.9 141 82.3
arahy.Tifrunner.gnm1.ann1.WEU379 Arachis hypogaea HOM05D005723 ORTHO05D005968 3.5e-62 242.7 271 49.8
Cre06.g285200 Chlamydomonas reinhardtii HOM05D005723 ORTHO05D005968 2.5e-60 236.5 223 51.6
Actinidia38586 Actinidia chinensis HOM05D005723 ORTHO05D005968 1.6e-59 233.8 288 51.4
TWI74G1261 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 2.6e-57 226.5 300 48.3
Haze_19996 Corylus avellana HOM05D005723 ORTHO05D005968 5.0e-56 222.2 124 87.9
SEGI_25574 Sequoiadendron giganteum HOM05D005723 ORTHO05D005968 6.1e-54 215.3 138 73.2
MSTRG.10844 Avicennia marina HOM05D005723 ORTHO05D005968 8.7e-53 211.5 124 83.9
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 1.4e-50 204.1 200 46.0
Sed0026560 Sechium edule HOM05D005723 ORTHO05D005968 3.1e-50 203.0 193 54.4
arahy.Tifrunner.gnm1.ann1.HLHI9C Arachis hypogaea HOM05D005723 ORTHO05D005968 2.5e-47 193.4 119 79.8
Os09g0553300 Oryza sativa ssp. japonica HOM05D005723 ORTHO05D005968 7.9e-46 188.3 111 73.0
HPP92_009080 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.3e-43 181.0 124 65.3
Mapoly0013s0082 Marchantia polymorpha HOM05D005723 ORTHO05D005968 8.2e-43 178.3 181 53.6
AagrBONN_evm.TU.Sc2ySwM_117.3227 Anthoceros agrestis HOM05D005723 ORTHO05D005968 1.4e-42 177.6 129 62.0
C05p20370 Brassica napus HOM05D005723 ORTHO05D005968 1.9e-39 167.2 115 73.0
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 1.9e-39 167.2 115 73.0
Pp3c3_14150 Physcomitrium patens HOM05D005723 ORTHO05D005968 2.0e-33 147.1 179 46.9
CBR_g29504 Chara braunii HOM05D005723 ORTHO05D005968 2.6e-33 146.7 160 42.5
Gohir.A10G137800 Gossypium hirsutum HOM05D005723 ORTHO05D005968 5.5e-31 139.0 90 78.9
Gohir.A13G075901 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.5e-28 131.0 78 80.8
BolC3t15180H Brassica oleracea HOM05D005723 ORTHO05D005968 2.7e-22 110.2 77 71.4
vmacro09121 Vaccinium macrocarpon HOM05D005723 ORTHO05D005968 5.7e-20 102.4 75 66.7
MCO15G614 Micromonas commoda HOM05D005723 ORTHO05D005968 4.5e-17 92.8 155 35.5
Haze_19995 Corylus avellana HOM05D005723 ORTHO05D005968 2.9e-16 90.1 97 49.5
BcaC05g26057 Brassica carinata HOM05D005723 ORTHO05D005968 4.2e-15 86.3 63 65.1
FAN09G1257 Fragaria x ananassa HOM05D005723 ORTHO05D005968 5.4e-10 69.3 129 41.9
Peaxi162Scf00006g00314 Petunia axillaris HOM05D000829 ORTHO05D000690 3.3e-07 60.1 165 27.9
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 2.8e-06 57.0 116 30.2
CAN.G85.14 Capsicum annuum HOM05D000829 ORTHO05D000690 6.1e-06 55.8 166 27.1
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 6.1e-06 55.8 129 28.7


User provided reference genes

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