Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0002290 Simmondsia chinensis HOM05D002612 ORTHO05D002859 7.1e-116 420.6 213 100.0
Hund19204 Selenicereus undatus HOM05D002612 ORTHO05D002859 2.2e-64 249.6 215 60.9
EL10Ac3g06912 Beta vulgaris HOM05D002612 ORTHO05D002859 2.9e-61 239.2 220 60.9
CiPaw.10G026200 Carya illinoinensis HOM05D002612 ORTHO05D002859 9.1e-55 217.6 215 54.0
Manes.09G035700 Manihot esculenta HOM05D002612 ORTHO05D002859 1.5e-52 210.3 214 54.2
AUR62012027 Chenopodium quinoa HOM05D002612 ORTHO05D002859 2.5e-52 209.5 224 54.0
AUR62015364 Chenopodium quinoa HOM05D002612 ORTHO05D002859 2.7e-51 206.1 226 53.1
Hma1.2p1_0676F.1_g201950 Hydrangea macrophylla HOM05D002612 ORTHO05D002859 1.0e-45 187.6 222 47.3
GSVIVG01033493001 Vitis vinifera HOM05D002612 ORTHO05D002859 3.8e-45 185.7 220 49.5
Gohir.A09G128100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 1.5e-44 183.7 217 46.5
Gohir.D09G124100 Gossypium hirsutum HOM05D002612 ORTHO05D002859 5.5e-44 181.8 217 45.6
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 7.2e-44 181.4 218 47.2
Duzib106G0243 Durio zibethinus HOM05D002612 ORTHO05D002859 7.2e-44 181.4 218 45.4
Gorai.006G142900 Gossypium raimondii HOM05D002612 ORTHO05D002859 7.2e-44 181.4 217 45.6
TWI74G1029 Tripterygium wilfordii HOM05D002612 ORTHO05D002859 1.2e-43 180.6 217 47.0
MD14G1056500 Malus domestica HOM05D002612 ORTHO05D002859 8.0e-43 177.9 214 43.5
Thecc.05G171700 Theobroma cacao HOM05D002612 ORTHO05D002859 5.2e-42 175.3 218 48.6
TAR623G0372 Trochodendron aralioides HOM05D002612 ORTHO05D002859 5.2e-42 175.3 227 41.4
Cfa020162 Carpinus fangiana HOM05D002612 ORTHO05D002859 3.4e-41 172.6 215 47.0
Prupe.7G077400 Prunus persica HOM05D002612 ORTHO05D002859 3.4e-41 172.6 214 49.1
Sed0010869 Sechium edule HOM05D002612 ORTHO05D002859 1.3e-40 170.6 216 45.4
arahy.Tifrunner.gnm1.ann1.47DXFL Arachis hypogaea HOM05D002612 ORTHO05D002859 2.8e-40 169.5 205 45.4
arahy.Tifrunner.gnm1.ann1.J786L6 Arachis hypogaea HOM05D002612 ORTHO05D002859 2.8e-40 169.5 205 45.4
Eucgr.K01842 Eucalyptus grandis HOM05D002612 ORTHO05D002859 5.4e-39 165.2 214 46.3
Ca_12071_v3 Cicer arietinum L. HOM05D002612 ORTHO05D002859 9.1e-39 164.5 220 48.6
CsaV3_3G038780 Cucumis sativus L. HOM05D002612 ORTHO05D002859 9.1e-39 164.5 223 43.5
Duzib128G1439 Durio zibethinus HOM05D002612 ORTHO05D002859 1.6e-38 163.7 220 46.8
Sed0006567 Sechium edule HOM05D002612 ORTHO05D002859 1.6e-38 163.7 216 45.8
TPR.G32347 Trifolium pratense HOM05D002612 ORTHO05D002859 2.0e-38 163.3 220 46.4
MSTRG.19906 Avicennia marina HOM05D002612 ORTHO05D002859 3.5e-38 162.5 223 45.3
VMungo1383G3725 Vigna mungo HOM05D002612 ORTHO05D002859 1.0e-37 161.0 194 46.4
Dinv24067 Davidia involucrata HOM05D002612 ORTHO05D002859 6.5e-37 158.3 223 42.2
PGR142G1191 Punica granatum HOM05D002612 ORTHO05D002859 1.1e-36 157.5 216 45.4
MBI06_g15023_MAGBIO Magnolia biondii HOM05D002612 ORTHO05D002859 2.5e-36 156.4 231 45.0
Atru.chr8.1116 Acer truncatum HOM05D002612 ORTHO05D002859 4.2e-36 155.6 229 44.1
QL07p023812 Quercus lobata HOM05D002612 ORTHO05D002859 4.2e-36 155.6 342 32.7
Psat6g091240 Pisum sativum HOM05D002612 ORTHO05D002859 4.7e-35 152.1 220 42.7
THA.LOC104802604 Tarenaya hassleriana HOM05D002612 ORTHO05D002859 6.1e-35 151.8 223 41.7
ClCG10G017560 Citrullus lanatus HOM05D002612 ORTHO05D002859 1.4e-34 150.6 273 36.3
Glyma.02G172700 Glycine max HOM05D002612 ORTHO05D002859 2.3e-34 149.8 192 44.8
Lalb_Chr18g0047881 Lupinus albus HOM05D002612 ORTHO05D002859 3.0e-34 149.4 198 48.0
Aqoxy2G00058 Aquilegia oxysepala HOM05D002612 ORTHO05D002859 4.4e-33 145.6 213 44.1
Lj5g0018767 Lotus japonicus HOM05D002612 ORTHO05D002859 7.5e-33 144.8 227 43.6
Phvul.001G142600 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 1.3e-32 144.1 217 45.2
RcHm_v2.0_Chr3g0479541 Rosa chinensis HOM05D002612 ORTHO05D002859 1.3e-32 144.1 216 47.2
Sp4g24300 Schrenkiella parvula HOM05D002612 ORTHO05D002859 4.9e-32 142.1 224 43.8
FvH4_6g22210 Fragaria vesca HOM05D002612 ORTHO05D002859 6.3e-32 141.7 216 45.8
Glyma.19G148000 Glycine max HOM05D002612 ORTHO05D002859 8.3e-32 141.4 215 45.1
AL4G40440 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 1.1e-31 141.0 227 41.9
Migut.J01834 Erythranthe guttata HOM05D002612 ORTHO05D002859 1.8e-31 140.2 232 43.1
CANSAT64G1369 Cannabis sativa HOM05D002612 ORTHO05D002859 4.1e-31 139.0 219 42.5
FAN14G3252 Fragaria x ananassa HOM05D002612 ORTHO05D002859 5.4e-31 138.7 216 45.4
Carub.0004s2442 Capsella rubella HOM05D002612 ORTHO05D002859 9.2e-31 137.9 223 41.7
CARHR137160 Cardamine hirsuta HOM05D002612 ORTHO05D002859 2.7e-30 136.3 224 40.6
Nitab4.5_0002488g0060 Nicotiana tabacum HOM05D002612 ORTHO05D002859 2.7e-30 136.3 225 39.6
Oeu033736.1 Olea europaea HOM05D002612 ORTHO05D002859 5.9e-30 135.2 214 42.1
AT2G42080 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 7.7e-30 134.8 223 44.4
Peaxi162Scf00258g00631 Petunia axillaris HOM05D002612 ORTHO05D002859 7.7e-30 134.8 254 36.2
BraA05t19264Z Brassica rapa HOM05D002612 ORTHO05D002859 1.3e-29 134.0 229 40.6
CAN.G570.9 Capsicum annuum HOM05D002612 ORTHO05D002859 2.3e-29 133.3 221 40.3
A05p02720 Brassica napus HOM05D002612 ORTHO05D002859 2.9e-29 132.9 229 40.6
Actinidia22037 Actinidia chinensis HOM05D002612 ORTHO05D002859 3.8e-29 132.5 165 43.6
Phvul.007G260100 Phaseolus vulgaris HOM05D002612 ORTHO05D002859 5.0e-29 132.1 197 44.2
SGA_v2.0_scaffold105G30491 Striga asiatica HOM05D002612 ORTHO05D002859 8.6e-29 131.3 200 43.5
Cc06_g15900 Coffea canephora HOM05D002612 ORTHO05D002859 1.1e-28 131.0 231 39.0
BcaB06g29225 Brassica carinata HOM05D002612 ORTHO05D002859 2.5e-28 129.8 223 37.2
HanXRQChr01g0009751 Helianthus annuus HOM05D002612 ORTHO05D002859 2.5e-28 129.8 237 40.1
C04p03250 Brassica napus HOM05D002612 ORTHO05D002859 5.6e-28 128.6 232 39.7
BolC4t21963H Brassica oleracea HOM05D002612 ORTHO05D002859 5.6e-28 128.6 232 39.7
Medtr0015s0110 Medicago truncatula HOM05D002612 ORTHO05D002859 1.2e-27 127.5 222 42.8
Nn2g15693 Nelumbo nucifera HOM05D002612 ORTHO05D002859 1.6e-27 127.1 200 40.5
Nitab4.5_0000324g0010 Nicotiana tabacum HOM05D002612 ORTHO05D002859 4.7e-27 125.6 225 37.8
Sopen03g016040 Solanum pennellii HOM05D002612 ORTHO05D002859 4.7e-27 125.6 218 36.7
Rhsim03G0005800 Rhododendron simsii HOM05D002612 ORTHO05D002859 8.0e-27 124.8 266 36.5
Ciclev10012465m.g Citrus clementina HOM05D002612 ORTHO05D002859 1.0e-26 124.4 235 38.3
BcaNung04409 Brassica carinata HOM05D002612 ORTHO05D002859 1.8e-26 123.6 227 39.2
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 4.0e-26 122.5 158 48.1
Solyc03g063350.3 Solanum lycopersicum HOM05D002612 ORTHO05D002859 8.9e-26 121.3 218 35.8
Sabra16G0049300 Salix brachista HOM05D002612 ORTHO05D002859 3.4e-25 119.4 189 40.2
SalBow6G0399 Salvia bowleyana HOM05D002612 ORTHO05D002859 4.9e-24 115.5 227 37.0
SalBow6G1620 Salvia bowleyana HOM05D002612 ORTHO05D002859 4.9e-24 115.5 227 37.0
FAN14G2805 Fragaria x ananassa HOM05D002612 ORTHO05D002859 1.8e-23 113.6 183 38.8
SGA_v2.0_scaffold37G14819 Striga asiatica HOM05D002612 ORTHO05D002859 7.0e-23 111.7 209 38.8
CSS0019314 Camellia sinensis var. sinensis HOM05D002612 ORTHO05D002859 1.6e-22 110.5 96 56.2
BcaC02g07265 Brassica carinata HOM05D002612 ORTHO05D002859 2.0e-22 110.2 223 34.5
ATR0807G015 Amborella trichopoda HOM05D002612 ORTHO05D002859 3.5e-22 109.4 211 41.7
unitig_699.g19445 Utricularia gibba HOM05D002612 ORTHO05D002859 1.0e-21 107.8 210 36.2
C04p69490 Brassica napus HOM05D002612 ORTHO05D002859 6.6e-21 105.1 223 32.7
BolC4t28448H Brassica oleracea HOM05D002612 ORTHO05D002859 6.6e-21 105.1 223 32.7
BraA04t18656Z Brassica rapa HOM05D002612 ORTHO05D002859 1.1e-20 104.4 221 36.2
Lsat_1_v5_gn_5_163560 Lactuca sativa HOM05D002612 ORTHO05D002859 2.5e-20 103.2 160 43.1
A04p31980 Brassica napus HOM05D002612 ORTHO05D002859 3.3e-20 102.8 221 36.2
Thhalv10017091m.g Eutrema salsugineum HOM05D002612 ORTHO05D002859 3.3e-20 102.8 138 40.6
PSO675G2711 Papaver somniferum HOM05D002612 ORTHO05D002859 1.6e-19 100.5 199 39.7
Aa31LG1G24120 Aethionema arabicum HOM05D002612 ORTHO05D002859 8.0e-19 98.2 254 32.3
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 8.9e-18 94.7 149 43.0
ECA248G2814 Erigeron canadensis HOM05D000267 ORTHO05D000298 9.8e-17 91.3 196 41.8
PGSC0003DMG400019954 Solanum tuberosum HOM05D002612 ORTHO05D002859 1.3e-16 90.9 145 38.6
AL5G39680 Arabidopsis lyrata HOM05D002612 ORTHO05D002859 1.7e-16 90.5 219 34.2
Sabra06G0147900 Salix brachista HOM05D002612 ORTHO05D002859 2.2e-16 90.1 101 48.5
BcaC02g12457 Brassica carinata HOM05D002612 ORTHO05D002859 3.7e-16 89.4 202 37.1
Haze_19994 Corylus avellana HOM05D002612 ORTHO05D002859 3.7e-16 89.4 73 58.9
Os07g0470800 Oryza sativa ssp. japonica HOM05D002612 ORTHO05D002859 3.7e-16 89.4 167 38.9
MELO3C009622.2 Cucumis melo HOM05D002612 ORTHO05D002859 8.3e-16 88.2 122 42.6
DCAR_013544 Daucus carota HOM05D002612 ORTHO05D002859 8.3e-16 88.2 136 44.1
HPP92_022664 Vanilla planifolia HOM05D002612 ORTHO05D002859 2.4e-15 86.7 179 35.8
Zm00001eb320120 Zea mays HOM05D002612 ORTHO05D002859 7.0e-15 85.1 168 36.3
Glyma.09G111101 Glycine max HOM05D002612 ORTHO05D002859 9.2e-15 84.7 97 48.5
Cpa.g.sc85.63 Carica papaya HOM05D002612 ORTHO05D002859 1.2e-14 84.3 159 40.9
FAN09G3207 Fragaria x ananassa HOM05D002612 ORTHO05D002859 4.6e-14 82.4 108 50.0
AT3G58020 Arabidopsis thaliana HOM05D002612 ORTHO05D002859 1.7e-13 80.5 224 31.2
MD12G1056800 Malus domestica HOM05D002612 ORTHO05D002859 3.9e-13 79.3 118 41.5
Carub.0005s2487 Capsella rubella HOM05D002612 ORTHO05D002859 8.6e-13 78.2 219 31.5
Sp5g04700 Schrenkiella parvula HOM05D002612 ORTHO05D002859 3.6e-11 72.8 237 31.2
CARHR168340 Cardamine hirsuta HOM05D002612 ORTHO05D002859 3.4e-09 66.2 222 32.9
Eucgr.I00248 Eucalyptus grandis HOM05D002612 ORTHO05D002859 5.8e-09 65.5 216 29.6
Thhalv10006160m.g Eutrema salsugineum HOM05D002612 ORTHO05D002859 7.5e-09 65.1 241 28.6
Sabra16G0049400 Salix brachista HOM05D002612 ORTHO05D002859 7.5e-09 65.1 78 43.6
BcaC07g40175 Brassica carinata HOM05D002612 ORTHO05D002859 3.7e-08 62.8 231 27.7
Potri.016G045401 Populus trichocarpa HOM05D002612 ORTHO05D002859 3.7e-08 62.8 158 32.3
Ciclev10026217m.g Citrus clementina HOM05D002612 ORTHO05D002859 1.4e-07 60.8 212 30.2
FAN28G2197 Fragaria x ananassa HOM05D002612 ORTHO05D002859 4.1e-07 59.3 219 26.5
TWI79G0923 Tripterygium wilfordii HOM05D002612 ORTHO05D002859 4.1e-07 59.3 209 30.1
Medtr3g095470 Medicago truncatula HOM05D002612 ORTHO05D002859 5.4e-07 58.9 217 30.4
TAR381G1391 Trochodendron aralioides HOM05D002612 ORTHO05D002859 5.4e-07 58.9 213 30.5
FAN19G0842 Fragaria x ananassa HOM05D002612 ORTHO05D002859 7.1e-07 58.5 219 26.0
FAN26G0434 Fragaria x ananassa HOM05D002612 ORTHO05D002859 9.2e-07 58.2 219 25.6
FvH4_1g23620 Fragaria vesca HOM05D002612 ORTHO05D002859 1.2e-06 57.8 219 26.0
Ca_16913_v3 Cicer arietinum L. HOM05D002612 ORTHO05D002859 1.6e-06 57.4 213 32.4
Psat5g063880 Pisum sativum HOM05D002612 ORTHO05D002859 2.1e-06 57.0 218 33.0
Prupe.6G131200 Prunus persica HOM05D002612 ORTHO05D002859 2.7e-06 56.6 202 31.2
Carub.0004s2441 Capsella rubella HOM05D002612 ORTHO05D002859 3.5e-06 56.2 238 27.3
A09p50840 Brassica napus HOM05D002612 ORTHO05D002859 4.6e-06 55.8 241 27.4
RcHm_v2.0_Chr2g0119201 Rosa chinensis HOM05D002612 ORTHO05D002859 6.0e-06 55.5 215 27.9
Cpa.g.sc152.23 Carica papaya HOM05D002612 ORTHO05D002859 7.8e-06 55.1 118 35.6
Glyma.09G116800 Glycine max HOM05D002612 ORTHO05D002859 7.8e-06 55.1 100 35.0


User provided reference genes

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